Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03970 ATGTCTTCTTCCACCTACTCTAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCAGATTGTGTTTTTGCGCCATATTTTCCGCCCGAAGAGCCTCAAAAGTTTGCTAATGTTCACAAGATCTTTGGTGCCAGTAATGTCAGCAAACTGTTGAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCTTACGAGGCCGAGGCAAGGATGAAAGACCCTGTGTATGGCTGCGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGATGCTACTAACGCCGACCTCATTCGCTATGCCTGCAGTGAAATCCCAGCCCCATCTCCGTCTTCATCGTCGCAATATGCTCGAAGGTCGTCATCAACAAGCCACGAGGGAAGCTCGTCTACCTCTAGCTATGGTCATTACTATACTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 534 48.5 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34700634 34702289 - CsaV3_3G042760.1 Csa03g03970 524875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03970 177 Coils Coil 89 109 - -
Csa03g03970 177 MobiDBLite consensus disorder prediction 120 167 - -
Csa03g03970 177 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Csa03g03970 177 MobiDBLite consensus disorder prediction 120 177 - -
Csa03g03970 177 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Csa03g03970 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 164 - -
Csa03g03970 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 164 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03970 Csa05g01896 CCT
Csa03g03970 Csa05g01896 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00123 Csa-Chr1:692578 Csa03g03970 Csa-Chr3:34700634 3.91E-73 dispersed
Csa02g01532 Csa-Chr2:14567747 Csa03g03970 Csa-Chr3:34700634 2.82E-51 dispersed
Csa03g03970 Csa-Chr3:34700634 Csa06g00193 Csa-Chr6:1330357 1.76E-50 dispersed
Csa01g00875 Csa-Chr1:5466501 Csa03g03970 Csa-Chr3:34700634 1.87E-63 wgd
Csa03g03970 Csa-Chr3:34700634 Csa05g01896 Csa-Chr5:22166489 9.84E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31393 PF03195 LOB 2.50E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03970 - - csv:101219482 334.724