Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03971 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCAGTGGACCCGTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTAAGCCGATCGTATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCTTGGCTGGCTGATGATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATCGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAAATACGGACACTATGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCTACTATGTTTCAGAAGCTTCTTCGAGGCTTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAACTCGATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACGTACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCGTCTCCATCGCCATCAAAACATAAGTTTTCGTCGGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAAAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTAGCAGCATTTGTCCAGAATGTGTTTGATCCAACACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATTCCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGGCAAACTATCAGAGATTCGAAGTACGTTAGCAGGAGATTGGCCTCTTGAAAAACTTGTTCACGTTGTCGAGAAACTCCAATGTCGAGCCCACGGTCGGGACGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATTGAACCGAGCAATCTCATCGGTCGTTATTTCATTGCTAAACAAGAGCTTTATATAATCCAATAG 1557 43.16 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSTMFQKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSSEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPTQRMKDLADMLTIHYYLLFDGPDDFWHHTKALFHESSTLSFSGKQFSGPNDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34710986 34716082 + CsaV3_3G042770.1 Csa03g03971 524876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03971 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Csa03g03971 518 SUPERFAMILY Protein kinase-like (PK-like) 85 365 IPR011009 -
Csa03g03971 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Csa03g03971 518 PANTHER - 2 517 - -
Csa03g03971 518 Gene3D - 365 516 - -
Csa03g03971 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Csa03g03971 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Csa03g03971 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Csa03g03971 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Csa03g03971 518 CDD PKc_MAPKK_plant_like 84 344 - -
Csa03g03971 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 Gene3D Transferase(Phosphotransferase) domain 1 165 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03971 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csv:101217978 1030.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00082 Csa-Chr2:578525 Csa03g03971 Csa-Chr3:34710986 5.28E-72 dispersed
Csa03g02812 Csa-Chr3:26953475 Csa03g03971 Csa-Chr3:34710986 1.48E-31 dispersed
Csa03g03971 Csa-Chr3:34710986 Csa06g02776 Csa-Chr6:24207515 3.47E-38 dispersed
Csa03g03971 Csa-Chr3:34710986 Csa01g02954 Csa-Chr1:25913871 3.20E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02954 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 7.3e-134 473.8
Csa02g00036 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 4.3e-126 448.0
Csa02g00082 . 33 304 MAP Kinase Kinase Gene Family AT4G26070 53.1 2.8e-85 312.4
Csa01g02954 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.8e-132 469.2
Csa02g00036 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 6.6e-119 424.1
Csa02g00082 . 33 277 MAP Kinase Kinase Gene Family AT4G29810 58.4 8.4e-82 300.8
Csa03g03971 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.7e-227 785.4
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT1G51660 64.3 8.4e-120 427.2
Csa01g00734 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 2.0e-84 309.7
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT3G21220 58.2 6.2e-112 401.0
Csa01g00734 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 1.1e-84 310.5
Csa02g00082 . 29 307 MAP Kinase Kinase Gene Family AT5G56580 80.7 3.8e-125 444.9
Csa01g02954 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-117 419.9
Csa02g00036 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.9e-108 389.4
Csa02g00081 . 1 100 MAP Kinase Kinase Gene Family AT5G56580 75.0 1.5e-36 150.6
Csa01g00734 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 9.6e-109 390.2
Csa01g00734 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.9 1.1e-82 303.5
Csa01g00734 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 4.5e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78070 PF00069 Pkinase 1.30E-59 CL0016 Csa PK