Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03977 ATGGAACCACTTGTTGATGGTATGAGTTCTTTACTGAAGACTCAGAACCCGGCATCTACATCAAGGAATCTCGTTTCATCTCGCCAGCCATCTCCTAAACAATCTAGGAATGAAGCAACTTCGTCAACGTCCTATGCTATGTCTCAAAATTGTGCCAAGAAACCTCTTCGCCATCCAAATGGGTCTTCTGTAAGTAATAAAAAACATCCTACCAATTTGAACGTGCAGAATGAAGGTTTAACTGATGTGACAAAACACACACATGTTTCCAATAAGGGGAAATCCGAGCTCGTAAACCTGACAGATAGTTCAAATAAATCAACTGAAAGTTCTTTTCAGAAGAAGGTTTCTTCGGAGGGAGGTGGAGCAGAACCTCTTGTGAAGCATATTATTGATGATTCTAAGGATTGTTGCTCAAGTGGCTCAGATGAATCTGGAAATCAAGTATTGAACGCATCGAAAGGAGCTTCCACACAAATAATTGATCAACGAAAATCTCAACCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAGCAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGTAGCATTGAAAAGTCTAGTGAAAGCGTCGATATCACAAATTCTCTTGATCTTGACAAGAGTAGGAAAACAAGTGTTTACCGAGGGAGCACTGGCAGTGATATCAGTGATGAAAGCAACTCAAGTAGTTTAAGCAATGCCATGTATAAGCCTCATAAGGCAAACGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGATTGCTACGAAGACTGGGATGTGGCGATATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAACGCGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTACACACACTTTGAGACAGAAAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCTGGGGGCGACTTGCATGCTCTTAGGCAGAGACAGCCCGGCAAGTTTTTTCCAGAACATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATTTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTAGTGAGAGACGATGGGCACATAATGCTCTCTGATTTTGACCTGTCTCTTAGATGCGCAGTCTCCCCGACACTTGTTAAATCATCGAACTCAGGTTTAGAAGCTAAAAGCTCAGGGTACTGTGTTCAGCCTGCTTGCATTGAACCTACTTGCATAATGCAGCCAGATTGTATCCAGCCTGCATGTTTTACACCTCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAGTCCAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAGCCCACAAGTGCAAGATCAATGTCATTCGTTGGTACACACGAGTACCTAGCACCTGAAATCATAAAAGGTGAAGGCCATGGAAGTGCCGTGGATTGGTGGACTTTCGGGATCTTTCTTTACGAACTTTTGTTCGGTAGAACCCCATTCAAGGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTAATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCATATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAAAGCGTGAATTGGGCACTTATCCGCTGTGCCAATCCTCCTGAAGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGAATGGAGACACCACACACACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2016 43.8 MEPLVDGMSSLLKTQNPASTSRNLVSSRQPSPKQSRNEATSSTSYAMSQNCAKKPLRHPNGSSVSNKKHPTNLNVQNEGLTDVTKHTHVSNKGKSELVNLTDSSNKSTESSFQKKVSSEGGGAEPLVKHIIDDSKDCCSSGSDESGNQVLNASKGASTQIIDQRKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSSESVDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCVQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHTPAGEKMPGVDVKPSGNYLEIDFF* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34781972 34786157 + CsaV3_3G042830.1 Csa03g03977 524882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03977 671 MobiDBLite consensus disorder prediction 93 117 - -
Csa03g03977 671 Gene3D Transferase(Phosphotransferase) domain 1 363 430 - -
Csa03g03977 671 MobiDBLite consensus disorder prediction 9 84 - -
Csa03g03977 671 PANTHER FLIPPASE KINASE 1-RELATED 14 671 - -
Csa03g03977 671 CDD STKc_phototropin_like 278 638 - -
Csa03g03977 671 SMART serkin_6 279 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03977 671 SUPERFAMILY Protein kinase-like (PK-like) 254 642 IPR011009 -
Csa03g03977 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Csa03g03977 671 ProSiteProfiles Protein kinase domain profile. 279 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03977 671 MobiDBLite consensus disorder prediction 227 250 - -
Csa03g03977 671 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 14 671 - -
Csa03g03977 671 Pfam Protein kinase domain 280 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03977 671 Pfam Protein kinase domain 512 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03977 671 MobiDBLite consensus disorder prediction 1 122 - -
Csa03g03977 671 Gene3D Phosphorylase Kinase; domain 1 277 362 - -
Csa03g03977 671 Gene3D Transferase(Phosphotransferase) domain 1 510 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00174 Csa-Chr2:1214591 Csa03g03977 Csa-Chr3:34781972 2.90E-147 dispersed
Csa03g00720 Csa-Chr3:6442047 Csa03g03977 Csa-Chr3:34781972 0 dispersed
Csa03g03977 Csa-Chr3:34781972 Csa06g02664 Csa-Chr6:23445828 0 dispersed
Csa04g00768 Csa-Chr4:5296189 Csa03g03977 Csa-Chr3:34781972 3.47E-112 dispersed
Csa06g00994 Csa-Chr6:8056924 Csa03g03977 Csa-Chr3:34781972 1.00E-114 dispersed
Csa07g00227 Csa-Chr7:1788691 Csa03g03977 Csa-Chr3:34781972 8.18E-107 dispersed
Csa03g03977 Csa-Chr3:34781972 Csa01g01551 Csa-Chr1:11109475 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78071 PF00069 Pkinase 8.60E-36 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03977 K08286 - csv:101219962 1318.52