Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03981 ATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAAGCCCGGTTTGCAAGAGAGGTTGCAATGTTGTCCAAAGTGCGACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATTGTGACTGAATTACTCACAGGTGGCACATTGCGCAAATTTCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCAATTGGGTTTGCGCTTGATATTGCTCGCGCAATGGAGTGTTTACACTCCCATGGAATTATACACCGTGACCTTAAACCAGAAAACTTGATCTTGACTGCAGACCATAAAACAATTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACGTATAGATGGATGGCTCCAGAGCTCTATAGTACGGTCACTTTAAAGCATGGAGATAAGAAGCATTATAATCACAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAATAGGTTACCTTTTGAAGGCATGTCGAATTTGCAGGCCGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGACCAAACTTCAGCCAGATTATACAGATGCTATTGCAGTCCCTTTCTAGAATATCACCACGATCACCTGTGATCCCACCTCGGATATGTGCTTCTGAAAACGTTGTGATGCCACCCGAATCTCCCTGTACAAATTCCTTGATGGCTGTTAGACATGGCTCAGGGGAAGCCCCACATGGCATGATCGAAGAAACACCAACAACCTCCTTCTTCTGCTTTAACAAATGTTACTGA 900 43.89 MVGKGDTPERMARREARFAREVAMLSKVRHKNLVKFIGACKEPMMVIVTELLTGGTLRKFLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTIKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRSPVIPPRICASENVVMPPESPCTNSLMAVRHGSGEAPHGMIEETPTTSFFCFNKCY* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34800785 34805300 + CsaV3_3G042870.1 Csa03g03981 524886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03981 299 SUPERFAMILY Protein kinase-like (PK-like) 13 259 IPR011009 -
Csa03g03981 299 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03981 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 93 105 IPR008271 GO:0004672|GO:0006468
Csa03g03981 299 PANTHER PROTEIN KINASE ATN1 1 276 - -
Csa03g03981 299 SMART serkin_6 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03981 299 CDD STKc_MAP3K-like 12 233 - -
Csa03g03981 299 PRINTS Tyrosine kinase catalytic domain signature 49 62 IPR001245 GO:0004672|GO:0006468
Csa03g03981 299 PRINTS Tyrosine kinase catalytic domain signature 87 105 IPR001245 GO:0004672|GO:0006468
Csa03g03981 299 PRINTS Tyrosine kinase catalytic domain signature 161 183 IPR001245 GO:0004672|GO:0006468
Csa03g03981 299 PRINTS Tyrosine kinase catalytic domain signature 204 226 IPR001245 GO:0004672|GO:0006468
Csa03g03981 299 Gene3D Transferase(Phosphotransferase) domain 1 3 243 - -
Csa03g03981 299 Pfam Protein tyrosine and serine/threonine kinase 11 233 IPR001245 GO:0004672|GO:0006468
Csa03g03981 299 PANTHER SERINE-THREONINE PROTEIN KINASE 1 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03981 Csa05g01889 CCT
Csa03g03981 Csa05g01889 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00107 Csa-Chr1:613749 Csa03g03981 Csa-Chr3:34800785 1.38E-178 dispersed
Csa03g03011 Csa-Chr3:28595217 Csa03g03981 Csa-Chr3:34800785 1.37E-124 dispersed
Csa03g03981 Csa-Chr3:34800785 Csa06g03220 Csa-Chr6:27257598 7.06E-84 dispersed
Csa03g03981 Csa-Chr3:34800785 Csa05g01889 Csa-Chr5:22098286 8.78E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78072 PF07714 PK_Tyr_Ser-Thr 1.40E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03981 - - csv:101219563 584.719