Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03991 ATGATGCAACGCCCTGATCATGATCATGATCAACCACAAAGCTCTGAGCTTTACAGATTGCTGGCACAGACCGGAGCCTTCACCCTCGGCGGTCCGGCCTTTCCTCCGCCGCCGGCTTCTACTCAAACCATGTCCAGCTCTTCTTCTTATTACCCTCTGGATAATAATAAGTCTCCCCAAGGGGTGGCCGCGCCGACGCCTCACGATAGAGCTTTGGCGGCTTTGAAGAATCATAAGGAGGCTGAGAAGCGGAGGAGGGAGAGAATTAATTCTCATCTTGATAAGCTTCGTACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTTGCAAAAGTTGTTGAGCGAGTGAAAGAGCTTAAAAACGAGACGTTGGAGATCGCAGAGCTCGAAAGCTTCCCCTCGGAGACCGATGAGATCAGTGTGCTTTCTGGGGAGAAATCGGAGGATGGAAGGCTTCTGTTCAAGGCATCGTTGTGTTGTGAGGACCGCTCTGACCTCATCCCTGACCTTAATGATATCCTTAATTCTCTACACCTCAAAACCCTTAGGGCTGACATTGTCACGGTTGGTGGTCGAATTCGTAACGTCCTGCTTATCGCCGCTAACGACCACCATAGTGTCGAATCTGTTCATTTCCTTCAAAATGCGTTGAAATCTCTTATTGAACGCTCAAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 732 48.77 MMQRPDHDHDQPQSSELYRLLAQTGAFTLGGPAFPPPPASTQTMSSSSSYYPLDNNKSPQGVAAPTPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETLEIAELESFPSETDEISVLSGEKSEDGRLLFKASLCCEDRSDLIPDLNDILNSLHLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLQNALKSLIERSNSSLTSKRRRLVLHHK* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34884792 34886594 + CsaV3_3G042970.1 Csa03g03991 524896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03991 243 PANTHER TRANSCRIPTION FACTOR BHLH30 14 241 IPR045847 GO:0003700|GO:0006355
Csa03g03991 243 MobiDBLite consensus disorder prediction 40 62 - -
Csa03g03991 243 CDD bHLH_AtAIG1_like 69 144 - -
Csa03g03991 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Csa03g03991 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 129 IPR036638 GO:0046983
Csa03g03991 243 SMART finulus 79 128 IPR011598 GO:0046983
Csa03g03991 243 Gene3D - 69 132 IPR036638 GO:0046983
Csa03g03991 243 MobiDBLite consensus disorder prediction 1 65 - -
Csa03g03991 243 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Csa03g03991 243 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03991 Csa-Chr3:34884792 Csa05g02577 Csa-Chr5:27092009 2.55E-45 dispersed
Csa03g03991 Csa-Chr3:34884792 Csa02g02212 Csa-Chr2:19895721 6.63E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31394 PF00010 HLH 3.80E-12 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03991 - K22484 csv:101220675 454.907