Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04004 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCGTCGGGGTCAACCTTCTGGAGGAAGAGACATTGAGCTAGGAGCAAATGCGCCTACTAGTGCAGGGGATCAGGGCATGGGGGATTTCTTCAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCGATCAAGCAGCGGATGGAAAAAGATGTCGATGAGGTTGGGAAAGTCGCACGTTATGTGAAGACTAAAGTTGAAGAACTCGACAGAGAGAATCTGTCAAATAGGCAGAAGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTATCGGGATGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGATGAAGAGACCATTGAGAAATTAATTGAAACTGGGGATAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTTTAGCTGAAATTCACGAACGTCACAGTGCAGTTAGAGAACTGGAAAGGAAGTTACTTGAGTTACAGCAGGTATTTCTCGATATGGCAGTATTGGTGGAGGCACAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTACAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTTCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 927 43.15 MNDLLSDSFEIRRGQPSGGRDIELGANAPTSAGDQGMGDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARYVKTKVEELDRENLSNRQKLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYRDVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIHERHSAVRELERKLLELQQVFLDMAVLVEAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34985908 35008353 + CsaV3_3G043100.1 Csa03g04004 524909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04004 308 Gene3D - 197 300 - -
Csa03g04004 308 CDD SNARE_syntaxin1-like 206 268 - -
Csa03g04004 308 Coils Coil 44 71 - -
Csa03g04004 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Csa03g04004 308 CDD SynN 37 194 IPR006011 GO:0016020
Csa03g04004 308 PANTHER - 3 300 - -
Csa03g04004 308 PANTHER SYNTAXIN 3 300 IPR045242 -
Csa03g04004 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Csa03g04004 308 SMART tSNARE_6 202 269 IPR000727 -
Csa03g04004 308 MobiDBLite consensus disorder prediction 1 36 - -
Csa03g04004 308 Gene3D - 33 161 - -
Csa03g04004 308 SMART SynN_4 32 158 IPR006011 GO:0016020
Csa03g04004 308 Pfam SNARE domain 243 295 IPR000727 -
Csa03g04004 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa03g04004 308 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02691 Csa-Chr2:23475336 Csa03g04004 Csa-Chr3:34985908 1.01E-106 dispersed
Csa02g02692 Csa-Chr2:23480767 Csa03g04004 Csa-Chr3:34985908 1.86E-48 dispersed
Csa03g00149 Csa-Chr3:1148834 Csa03g04004 Csa-Chr3:34985908 1.24E-09 dispersed
Csa03g04004 Csa-Chr3:34985908 Csa06g02729 Csa-Chr6:23857036 6.10E-90 dispersed
Csa03g04004 Csa-Chr3:34985908 Csa06g02728 Csa-Chr6:23853120 1.05E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04004 K08486 - csv:101203075 559.681