Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04035 ATGCAACTAAAAATAACAAAGGGAAATGGGCACTGCCCGTTTTGTTTCGATCATTGGTTTAGTGAAGAAGAGAGTTACCCAGGTCGTTTGCGTGGTGGGAGAGAAAATATGGGCGCGCTTTTGGTGGTTTCGCTGCTATTTTTGGATTTCTTCTACTTGGCAGCTTCTTCTACTGACTCCCGTGATTCTTCAGTTCTTCAATCCTTGAAAGACGGATGGCAAAATACACCACCAAGCTGGGGAACATCAAATGATCCATGTGGAACTCCCTGGGATGGAGTGATTTGCAAAAACTCTAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGAGACATTGGAGGCCTTACTGAACTGAGATCACTGGACCTTGCAGCCAACCGAGACCTTGTTGGTTCGATCTCTCGGGCTCTAGGGAACTTGTTGAAACTAGATACCTTGATCCTTTCTACGTGTGGATTTAGTGGTAAAATTCCAGAAGAATTGGGCAATCTTTCTGAGCTAACCTTCTTGTCTTTATATTCTAACAGTTTCACCGGTACCATACCGGCAACTCTGGGAAAACTCTCCAAACTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCCTCGGGTTTAGATAGACTTTATATGGCTAAACATTTTCATTTCAGCAATAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAACAATTTTTCTGGGATTATCCCACCAACATTGGGACTTGTTAAGACCCTCGAGGTTCTTCGAGTTGATCGGAATTCTTTGACGGGAAATGTCCCATCAACTCTAAACAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATATGCTCACAGGTCCACTACCAAACTTATCTCAAATGAGTTCACTAACTTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTAGCTCCAGGATGGTTCTCAACTCTACAATCTCTCACCACTCTAATTGTTGAATATGGATTAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACATATACAACAAGTAAAACTGAAGAATAATACATTTAGTGGGACATTAAATATGGGCGACAGCATCAGCCAACCGTTGCAGCTAGTCGAGTTGCAAAATAACAACATTTCCTCAGTTACCTCTTTTTCGGGTTATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGACGCTGATATCCTCTCAAATACAAACTATTGCCAACTTCAACAGCAACAAGCAAAAACCTATATCACCAGCCTTGTCTACTGTGGCCGTAATTCATGTCCTCCTGATGAGAAGCTGAACCCACGAAGTTGTGAATGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCACTTTCCGGGAATTGTCCAATATAACTCTGTTTCATTTATTGGAAATGAGCCTTTTGGAAAAATTCAATCGAACACCTTTTATTCAAAACCCTTTCTTTAATGCTCATGATTATCTTCAGATCGAGCTTGCACTTTTTCCAGCCGATGGTAAATATTTCAAAAGGGAAGACATTCAGAGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCCCCCGACAAATTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATTGATAATGGATCAACTTCAACCAACACTGGAATGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTTTGCCTCATTGGACTTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAATTCAAATGCTCTCTGGGTGCCAAGTGGAAACGATAGTGGAAGCGCGCCACAATTAAAGGGTGCCAGATGGTTTTCTTATGTTGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGGTAGGATCAGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAACTAGTTGCAATCAAAAGAGCCCAACAAGGTTCAATGCAGGGTGGCCTTGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAAAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAAATTCTTGTTTATGAATTCATGCCTAATGGGACACTTAGACAAAGCTTAGCTGGAAAATCTGGTATTTATCTTGACTGGAAGAGAAGGCTTCGTATCGCTCTAGGGTCAGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATCGAGATGTTAAGTCCACCAACATTTTGCTAGATGAATGTTTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAGGGCACAATGGGTTATTTGGATCCTGAATATTACATGAGTCAAAAGTTGACAGAGAAAAGTGACGTGTACAGCTTCGGAGTAGTTATGTTGGAATTGCTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGTGAGGTGCGTATGTCGATGAATAAGAATGATGAAGAATATTATGGTTTGAAGCATATACTGGATCCAACCATATTTGATAATACGACAAATCTTATCGGGTTCGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTCGAAGAAGCAGCTGCAAATCGTCCCACAATGAGTGAAATGGTTAAGGCAATTGAGAATATTTTGCAGAATGATGGAATAAATACAAGTTCAACATCAGCATGCTCATCTGCCACAGACTTTGTGACTTCCAAAACTTCTTCTAGACATCCCTATAATGATGCTTCGCAGAAAGAGAGTGTCAACAGGAATAGCCAATGA 2934 40.9 MQLKITKGNGHCPFCFDHWFSEEESYPGRLRGGRENMGALLVVSLLFLDFFYLAASSTDSRDSSVLQSLKDGWQNTPPSWGTSNDPCGTPWDGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLVGSISRALGNLLKLDTLILSTCGFSGKIPEELGNLSELTFLSLYSNSFTGTIPATLGKLSKLYWLDLADNQLTGALPVSTSGSSGLDRLYMAKHFHFSNNQLSGTIPPELFSSEMVLIHILFDGNNFSGIIPPTLGLVKTLEVLRVDRNSLTGNVPSTLNNLINVNELHLANNMLTGPLPNLSQMSSLTYVDLSNNSFSSSVAPGWFSTLQSLTTLIVEYGLIRGNLPEGIFSLPHIQQVKLKNNTFSGTLNMGDSISQPLQLVELQNNNISSVTSFSGYTNALMLTGNPVCDADILSNTNYCQLQQQQAKTYITSLVYCGRNSCPPDEKLNPRSCECAYPYEGTLYFRGPTFRELSNITLFHLLEMSLLEKFNRTPFIQNPFFNAHDYLQIELALFPADGKYFKREDIQRIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDNGSTSTNTGMVIGIAVGCAFLVLCLIGLGTYAIQQKRRAEKANSNALWVPSGNDSGSAPQLKGARWFSYVELKKCTDNFSTSNVVGSGGFGMVYRGTLVDGKLVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKSGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDECLNAKVADFGLSKLVSDSVKGHVSTQVKGTMGYLDPEYYMSQKLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKNDEEYYGLKHILDPTIFDNTTNLIGFGKFLELAMQCVEEAAANRPTMSEMVKAIENILQNDGINTSSTSACSSATDFVTSKTSSRHPYNDASQKESVNRNSQ* 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35225433 35234255 + CsaV3_3G043410.1 Csa03g04035 524940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04035 977 Gene3D Phosphorylase Kinase; domain 1 631 733 - -
Csa03g04035 977 SMART serkin_6 658 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04035 977 SUPERFAMILY Protein kinase-like (PK-like) 644 953 IPR011009 -
Csa03g04035 977 ProSiteProfiles Protein kinase domain profile. 658 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04035 977 CDD STKc_IRAK 664 932 - -
Csa03g04035 977 Gene3D Transferase(Phosphotransferase) domain 1 734 953 - -
Csa03g04035 977 Gene3D Ribonuclease Inhibitor 59 224 IPR032675 -
Csa03g04035 977 Gene3D Ribonuclease Inhibitor 225 455 IPR032675 -
Csa03g04035 977 Pfam Leucine rich repeat N-terminal domain 61 96 IPR013210 -
Csa03g04035 977 MobiDBLite consensus disorder prediction 954 977 - -
Csa03g04035 977 SUPERFAMILY L domain-like 73 335 - -
Csa03g04035 977 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
Csa03g04035 977 PANTHER LRR RECEPTOR-LIKE KINASE 40 962 - -
Csa03g04035 977 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 40 962 - -
Csa03g04035 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Csa03g04035 977 Pfam Protein tyrosine and serine/threonine kinase 661 928 IPR001245 GO:0004672|GO:0006468
Csa03g04035 977 SUPERFAMILY L domain-like 318 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02986 Csa-Chr3:28466318 Csa03g04035 Csa-Chr3:35225433 0 dispersed
Csa03g04035 Csa-Chr3:35225433 Csa04g01709 Csa-Chr4:16488228 1.25E-158 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78074 PF07714 PK_Tyr_Ser-Thr 1.20E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04035 - - csv:101207906 1807.34