Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04036 ATGATGGCATTTAGCTTGGTTTCTGCATGGAACAAGAGGCGTAGACGAAAAAAATCTTCTCATTTAAATGATCATCATCAAACTACTACAGACGATCCTTGGATTTATAGGCCAGTTCAGTTGTGGCAACTTGAGGATCAAACACCCCTTGAAAGACCTTCCAAAAGACACCATGGATCTGCTGTCTTCACGCTTCGGGAAATGGAAGACGCTACAAGTTCCTTTAGCGATGCCAACTTGCTCGGCAAAGGTGGCTTTGGACGAGTTTATCGAGGCACCTTGCGATCTGGAGAGGTAGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTCAGAGTGGAAGTTGACATTTTGAGCAGATTGGACCATCCAAATCTTGTTTCCTTAATTGGTTACTGTGCTGATGGCAAGCATCGCTTTTTAGTTTATGAATATATGCATAAAGGAAACTTACAACATCATTTAAATCATAACGGAATTGGATCAGAAGCAAAAATGGATTGGGAAAGGAGGTTGAAAGTGGCACTTGGAGCAGCAAAAGGACTTGCTTATCTTCATTCAACTTCAGCTGCTGGAATGCCAATTGTCCATAGGGACTTCAAATCCACTAATATTCTTCTCGACTCCAACTTGGATGCAAAGATATCAGATTTTGGGCTAGCAAAGTTTATGCCAGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGAACATTTGGATACTTTGACCCTGAATATACTTCGACAGGGAAACTGAGCTTGCAAAGCGATGTGTATGCATTTGGAGTGGTTCTTCTTGAGCTGCTCACTGGCCGCAGAGCCGTCGACTTGAACCAAGGCCCTAACGATCAAAACCTTGTCTTACAGGTAAGACACATATTGAATGATCGAAAGAAATTACGTAAGGTGATAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCTATAGTCATATTTGCAAATTTGGCTTCACGTTGCGTACGAACAGAGAGTAGTGACAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTGCAAATGCGCAAGACCTAA 1107 42.19 MMAFSLVSAWNKRRRRKKSSHLNDHHQTTTDDPWIYRPVQLWQLEDQTPLERPSKRHHGSAVFTLREMEDATSSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQHHLNHNGIGSEAKMDWERRLKVALGAAKGLAYLHSTSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMSRSSYTMESIVIFANLASRCVRTESSDRPTMAECVRELQMIIYTKLQMRKT* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35232968 35236439 - CsaV3_3G043420.1 Csa03g04036 524941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04036 368 CDD STKc_IRAK 81 356 - -
Csa03g04036 368 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04036 368 PIRSF ILK 23 367 - -
Csa03g04036 368 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Csa03g04036 368 Pfam Protein kinase domain 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04036 368 Gene3D Transferase(Phosphotransferase) domain 1 154 367 - -
Csa03g04036 368 PANTHER OS01G0750732 PROTEIN 1 365 - -
Csa03g04036 368 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL28-RELATED 1 365 - -
Csa03g04036 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Csa03g04036 368 SUPERFAMILY Protein kinase-like (PK-like) 54 361 IPR011009 -
Csa03g04036 368 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04036 Csa-Chr3:35232968 Csa03g01426 Csa-Chr3:10668107 2.00E-93 dispersed
Csa03g04036 Csa-Chr3:35232968 Csa03g03235 Csa-Chr3:29698154 2.14E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78075 PF00069 Pkinase 5.10E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04036 - - csv:101223038 730.324