Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04039 ATGGCAATCCGTAAAGATATGGGTAATTATGAGCCTATTAAAGGAGCAGATGACTGTGATCTCGTTAATGAGACTGCTATTCTCATAAATCCAGATTCCGTTACTCTTGTCTCTGTTTCTAAGCACTGTAATCAGAGTGATGAAGATGTTGAGATGGCTCTTCGTGGTTCACATTCCAGATCTCCTCTTCCTATTCACAATGCCAATCCCTTAACCACTCCTGTTTCTTCTAAAATCGATGAACCCCAATTTTCATCTTCTGTTAGACCTATTCTCCGATCTTCCGACCAATGCCATCGTCTTGTTTCGCTTGATGTGTTTCGCGGTATCACTGTTGCGCTAATGATAGTGGTGGACTATGCTGGTGGGGTTATGCCTGCAATAAATCATTCGCCATGGGATGGTTTAACTCTGGCTGATCTTGTAATGCCATTTTTCCTATTCATAGTTGGAGTTTCGCTTGCCCTTGCTTACAAGAAAATTCCAAGCAGAGGCATTGCAACTCAGAAGGCTGTGTTACGGACGTTGAAGCTTTTGTTCTTAGGCCTCTTTCTTCAAGGTGGTTTTCTCCACGGTGTAAACAATTTAACTTATGGAGTGGATATCCAGCAAATTAGATGGATGGGAATCTTACAGAGAATAGCAATTGCATATTTCCTGGCAGCCCTGTGTGAGATATGGCTAAAGGGCAGTGATTATGTGAATTCAGAAACTGCACTGCGGAGAAAGTATCAATTACAGCTAGTTGCTGCTGTTGTCCTCACAATGTTATATCTTGCCCTGTCATATGGATTGTATGTTCCTGATTGGGAGTACCAAGTTCCAAGTCTAACTACATCCGATGTGGCTTCTCCAAAGATATTTTCGGTGAAATGTGGCACACGTGGTGACACTGGACCTGCCTGCAATGCTGTGGGAATGATAGATCGTAAGATATTTGGTATCCAACATCTGTATAAAAGACCTATTTATGCGCGGACTGAGCAATGTAGCATTAATGCACCAGACTATGGCCCATTGCCTCCTGATGCTCCTTCTTGGTGCCAAGCTCCGTTTGATCCCGAAGGACTTTTGAGTACAGTGATGGCTGTTGTTACCTGCTTGGTTGGCTTACATTATGGACATATCATTGTACATTTCAAAGATCACCGAGACCGAATGCTTCATTGGATTATACCTTCTTCTTGTCTAATTGTATTGGCCATTGGCCTGGACTTCTTAGGGATGCATATAAATAAGGTTCTTTATACAGTTAGTTACATGAGTGTCACTGCTGGTGCAGCTGGACTTCTCTTTACCGGGATATACTTGATGGTTGATGTGTACAGTTGGAGACGCATGAATGTGGTGATGGAGTGGATGGGAAAGCACGCATTGGTGATATACGTTCTTGCCGCCTGCAACGTTCTGCCTGTGATTCTCCAAGGCTTCTATTTGGGTCAGCCTCAGAACAACATTAGACGTGGACGGGTAGACCCAAACATTGTCCCCAATGTTGTTCTGTACTTAATTGCATGCTTAGAGACGTTCAGAAAAATATTTGGAGTAAAATCTGTGGGGTCATTGCATGGTTTTATGCATAAATATTTGAAGAATATGATCACTAATGTTTTTGGAATTGAAAGTTTGAAAAATATGATTTCTGAAGTTGAAGTTACTTCAACTACAAGATTGAAGAAATGGGCTTCTCATAATGATATAGTTGAATTGAAGGATGAGATTGCAAATATGATATTTGATTTAAGTGCAAAGAGATTGATTAGTTATGATCCAGAGAAGTGTGGAGAAAATATGAGAGAGAACTTTGTTGCATTCATTCAGGGTTTGATCTCTTTCCCTATTGATATTCCTGGAACCTCTTACCACAAATGCTTGCAGGGTAGAAAAAGAGTAATGAGGATGCTGGAAAATATACTAAAAGAAAGGCAGCAAAACCCAAGGGAACAACAAGTTGATTATTTTGATTTCGTTATTCAAGAACTTAAAAAAGATGGAACTCCTCTCACACAACAAGTTGCTTTGGACTTGATCTTTTTGCTTCTTTTTGCAAGCCATGAAACCACTTCTATTGCTTTGACTTTAGCCATCAAATTTCTCACAGACCATCCCCACGTCTTAAACCAGTTAACGGCAGAACATGAGGGAATATTGAAGAAGAGGAAAAATAAAAGTGATAAGATTAGTTGGAACGAATACAAATCCATGACATTTACATTCAAGTTTATGAACGAAACATTGAGGTTGGCAAATATTGCTCCAGGGATATTTCGACGAGCATTAAGAGATGTTGAGTTCAAGGGATACACGATCCCAGAAGGATGGGCTGTCATGGTTTGTCCTCCGGCCATTCATTTGGATCCAAAAGCTTTCGCTGACCCACTTGCATTCAACCCATGGCGATGGGATGAGGAACAGAGATGTGATGGGGCATCGAAGAATTTCATGGCATTTGGTGGTGGAATCAGATTTTGCATTGGTGCTGACTTTGCCAAATTGCAAATGGCTGTGTTTCTCCATCACTTGGTTACCAACTACAAGTTGAAGCCAATTAAAGGAGGCAATATTGTTCGAACCCCAGGCGTTCAATTTCCTGATGGCTTTCACGTTCAGATCCTAAACAAAGATTAG 2628 40.98 MAIRKDMGNYEPIKGADDCDLVNETAILINPDSVTLVSVSKHCNQSDEDVEMALRGSHSRSPLPIHNANPLTTPVSSKIDEPQFSSSVRPILRSSDQCHRLVSLDVFRGITVALMIVVDYAGGVMPAINHSPWDGLTLADLVMPFFLFIVGVSLALAYKKIPSRGIATQKAVLRTLKLLFLGLFLQGGFLHGVNNLTYGVDIQQIRWMGILQRIAIAYFLAALCEIWLKGSDYVNSETALRRKYQLQLVAAVVLTMLYLALSYGLYVPDWEYQVPSLTTSDVASPKIFSVKCGTRGDTGPACNAVGMIDRKIFGIQHLYKRPIYARTEQCSINAPDYGPLPPDAPSWCQAPFDPEGLLSTVMAVVTCLVGLHYGHIIVHFKDHRDRMLHWIIPSSCLIVLAIGLDFLGMHINKVLYTVSYMSVTAGAAGLLFTGIYLMVDVYSWRRMNVVMEWMGKHALVIYVLAACNVLPVILQGFYLGQPQNNIRRGRVDPNIVPNVVLYLIACLETFRKIFGVKSVGSLHGFMHKYLKNMITNVFGIESLKNMISEVEVTSTTRLKKWASHNDIVELKDEIANMIFDLSAKRLISYDPEKCGENMRENFVAFIQGLISFPIDIPGTSYHKCLQGRKRVMRMLENILKERQQNPREQQVDYFDFVIQELKKDGTPLTQQVALDLIFLLLFASHETTSIALTLAIKFLTDHPHVLNQLTAEHEGILKKRKNKSDKISWNEYKSMTFTFKFMNETLRLANIAPGIFRRALRDVEFKGYTIPEGWAVMVCPPAIHLDPKAFADPLAFNPWRWDEEQRCDGASKNFMAFGGGIRFCIGADFAKLQMAVFLHHLVTNYKLKPIKGGNIVRTPGVQFPDGFHVQILNKD* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35281608 35294574 + CsaV3_3G043450.1 Csa03g04039 524944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04039 875 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 100 224 IPR012429 -
Csa03g04039 875 PANTHER LD22376P 41 486 - -
Csa03g04039 875 PANTHER HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE 41 486 - -
Csa03g04039 875 Pfam Cytochrome P450 528 856 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 SUPERFAMILY Cytochrome P450 509 869 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 817 826 IPR017972 GO:0005506|GO:0016705
Csa03g04039 875 PRINTS P450 superfamily signature 683 700 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS P450 superfamily signature 740 751 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS P450 superfamily signature 815 824 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS P450 superfamily signature 824 835 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS E-class P450 group IV signature 735 751 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS E-class P450 group IV signature 784 802 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS E-class P450 group IV signature 824 842 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS E-class P450 group IV signature 808 824 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 PRINTS E-class P450 group IV signature 768 782 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04039 875 Gene3D Cytochrome P450 502 873 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01398 Csa-Chr2:13367357 Csa03g04039 Csa-Chr3:35281608 5.36E-132 dispersed
Csa03g00357 Csa-Chr3:2950595 Csa03g04039 Csa-Chr3:35281608 0 dispersed
Csa03g03305 Csa-Chr3:30115358 Csa03g04039 Csa-Chr3:35281608 6.84E-110 dispersed
Csa03g04039 Csa-Chr3:35281608 Csa06g00760 Csa-Chr6:6137200 6.76E-88 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04039 K10532 - csv:101208875 967.222