Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04064 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAAGAAGACGCACTTTTGGCCGGAGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTTAAAGATCCTGATTTCGCTCCCTCCCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCAGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAACCTCTGCTCCTGCTAAACCCAATGCATCTGCTGATGCTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTCGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAGAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACTCCTAAACAAAAAGATGTCAGGCAACGGATATCGCAATACAACACTACAGGAGGGGTGATGCCATCAGCAGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCATACAAAGTGGCTGATGCAGAGAACAAATCTTTCTTGGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACTCAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACTTCATATGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGGATCTATGCCTACGGTTTTGAGAAGCCATCTGCAATTCAACAAAGGGGAATTGTTCCTTTTTGTAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACCGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTTCAGTGCCAGGCTTTGGTCTTGGCACCCACTAGGGAACTTGCACAGCAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACGAGTGTACGTGAAGACCAACGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACACCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGCCCCGACTACATTCGGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGTGGATTTAAGGACCAGATTTATGATATCTTCCAGCTGCTACCATCCAAGATTCAGGTTGGGGTGTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTTAAGCGTGATGAGCTCACCCTTGAGGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAGCTCGAGACACTGTGCGATCTTTATGAAACTTTGGCCATTACACAGAGTGTCATCTTCGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAAAACACCCGAGACATCATCATGCGTGAGTTTCGATCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTGTTGGCCCGTGGTATCGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAACTACCTTCATCGTATTGGACGAAGTGGACGATTTGGAAGAAAGGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTTCTGTGA 2052 44.2 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAAPKAKAIVAAISNNQTSAPAKPNASADAAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYRVKKDNSLAVKTPTPKQKDVRQRISQYNTTGGVMPSAETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35570090 35579366 - CsaV3_3G043700.1 Csa03g04064 524969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04064 683 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 457 465 IPR000629 -
Csa03g04064 683 SMART ultradead3 329 526 IPR014001 -
Csa03g04064 683 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Csa03g04064 683 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa03g04064 683 Gene3D - 8 87 - -
Csa03g04064 683 Gene3D - 519 683 IPR027417 -
Csa03g04064 683 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Csa03g04064 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724
Csa03g04064 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 664 IPR027417 -
Csa03g04064 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 511 IPR014001 -
Csa03g04064 683 PANTHER RNA HELICASE 293 683 - -
Csa03g04064 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 683 IPR001650 -
Csa03g04064 683 MobiDBLite consensus disorder prediction 1 27 - -
Csa03g04064 683 CDD SF2_C_DEAD 523 653 - -
Csa03g04064 683 Gene3D - 111 198 IPR036388 -
Csa03g04064 683 SMART sant 4 59 IPR001005 -
Csa03g04064 683 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
Csa03g04064 683 MobiDBLite consensus disorder prediction 100 114 - -
Csa03g04064 683 MobiDBLite consensus disorder prediction 83 114 - -
Csa03g04064 683 Gene3D - 300 518 IPR027417 -
Csa03g04064 683 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Csa03g04064 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Csa03g04064 683 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Csa03g04064 683 CDD DEADc_EIF4A 315 512 - -
Csa03g04064 683 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 293 683 - -
Csa03g04064 683 SMART helicmild6 563 644 IPR001650 -
Csa03g04064 683 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa03g04064 683 Pfam DEAD/DEAH box helicase 335 496 IPR011545 GO:0003676|GO:0005524
Csa03g04064 683 CDD SANT_TRF 6 56 - -
Csa03g04064 683 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02840 Csa-Chr3:27153934 Csa03g04064 Csa-Chr3:35570090 3.68E-179 dispersed
Csa03g04064 Csa-Chr3:35570090 Csa03g02019 Csa-Chr3:16181833 1.17E-62 dispersed
Csa04g00018 Csa-Chr4:139643 Csa03g04064 Csa-Chr3:35570090 1.17E-33 dispersed
Csa06g01113 Csa-Chr6:9228120 Csa03g04064 Csa-Chr3:35570090 5.62E-06 dispersed
Csa06g03031 Csa-Chr6:26076654 Csa03g04064 Csa-Chr3:35570090 1.81E-36 dispersed
Csa02g00298 Csa-Chr2:2055416 Csa03g04064 Csa-Chr3:35570090 1.24E-08 transposed
Csa02g02384 Csa-Chr2:21146730 Csa03g04064 Csa-Chr3:35570090 2.91E-75 transposed
Csa03g00903 Csa-Chr3:7486811 Csa03g04064 Csa-Chr3:35570090 4.63E-88 transposed
Csa03g01356 Csa-Chr3:10232396 Csa03g04064 Csa-Chr3:35570090 2.22E-30 transposed
Csa03g02008 Csa-Chr3:15936882 Csa03g04064 Csa-Chr3:35570090 7.10E-52 transposed
Csa06g02292 Csa-Chr6:20561570 Csa03g04064 Csa-Chr3:35570090 1.72E-08 transposed
Csa06g03310 Csa-Chr6:27715754 Csa03g04064 Csa-Chr3:35570090 1.58E-09 transposed
Csa03g04064 Csa-Chr3:35570090 Csa07g02378 Csa-Chr7:21924633 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31401 PF00270 DEAD 1.10E-39 CL0023 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04064 K03257 - csv:101223055 818.535