Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04066 ATGATAGAGGATGGATTGTTTGCTATTGATGGCGGTACAAGTATCAACGTGCAAGAAGTTGTCAAAATCGGCGATGTTAGTAATGGTCATATTGTTGCTAAGGCGATCATCCTGGTCGAATCAGGGAAGATCCCTACTAGTGAACTTATTGTGGCGACAGTAAGCCCAGATTTAGAAGTATCTGCATCGTCGGAGCTGAACGTTCCTGCAGTAGTTTTCCAATCGAAAGGGGCAGAAAGTGTTCATAAAGTCATTCGTAATGTCTTTGAACGCGATTGTATTCCTCTTTGGGGGTCCGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGATGCAATTGCTACTGTTCCTTGTTTTGCAAAAATTCCTATCAAAATGCTTGTAGGGAATAGTTTGATGAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCACTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCAAGAACGCATACACTTGGCACTAGCTGAAGAGATAAAAGGATTTAAACAGAATCTAGAAAATGGAAACAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTCAACAATTGCTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGTAGATCAGTCAGTGGAAGCAGTGGAGATGTTTCCCATACAAGCTTCGAACCTGTTGCCCCGGAAACTGTTGGCTCTACGGCTGTTGTTGCCTTGGTCTGTTCGTCGCACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTTCTATGCCGTGGTAAAGAACCCATGGCTCTATCGGTCGATCATAAACCAAATCGCGAAGATGAATATGCTAGGATTGAATCATCTGGAGGCAAGGTCATCCAGTGGAACGGACATCGTGTGTTTGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATTATTCCCGATCCAGAAGTCATGTTCATCCCTCGTGCCAAAGAAGATGAATGTCTTATTTTAGCCAGCGATGGACTGTGGGATGTGATGACAAATGAGGAAGTCTGTGACGTAGCTCGAAGGCGGATTCTTCTTTGGCACAAGAAACACGGGGCTTCATCTCTTGCTGATCGGGGTACAGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1275 43.84 MIEDGLFAIDGGTSINVQEVVKIGDVSNGHIVAKAIILVESGKIPTSELIVATVSPDLEVSASSELNVPAVVFQSKGAESVHKVIRNVFERDCIPLWGSVSICGRRPEMEDAIATVPCFAKIPIKMLVGNSLMNGMGQSLTHLNSHFFGVYDGHGGPQVADYCQERIHLALAEEIKGFKQNLENGNNGENWQQDWERTFNNCFLRVDDEIEGKVGRSVSGSSGDVSHTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFIPRAKEDECLILASDGLWDVMTNEEVCDVARRRILLWHKKHGASSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35595281 35599176 + CsaV3_3G043720.1 Csa03g04066 524971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04066 424 ProSiteProfiles PPM-type phosphatase domain profile. 96 414 IPR001932 -
Csa03g04066 424 PANTHER PROTEIN PHOSPHATASE 2C 16 16 424 - -
Csa03g04066 424 PANTHER ALPHABET, ISOFORM E-RELATED 16 424 - -
Csa03g04066 424 Gene3D - 83 424 IPR036457 -
Csa03g04066 424 ProSitePatterns PPM-type phosphatase domain signature. 147 155 IPR000222 GO:0043169
Csa03g04066 424 SUPERFAMILY PP2C-like 87 415 IPR036457 -
Csa03g04066 424 Pfam Protein phosphatase 2C 124 407 IPR001932 -
Csa03g04066 424 SMART PP2C_4 86 412 IPR001932 -
Csa03g04066 424 CDD PP2Cc 98 414 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02859 Csa-Chr1:25154173 Csa03g04066 Csa-Chr3:35595281 8.37E-92 dispersed
Csa03g04066 Csa-Chr3:35595281 Csa06g02025 Csa-Chr6:18188911 0 dispersed
Csa03g04066 Csa-Chr3:35595281 Csa06g00134 Csa-Chr6:877776 7.87E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04066 K14497 - csv:101203499 836.639