Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04077 ATGATTAAAAGTTTGTTGCTTCAACATCAATCTCAAGCTATGGAGGAAAATTTGTCAAATTTAACTTCAGCTTCTGGTGAAGCCAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCAGGCCAGTTCTTTTCCACCCCACCACCACCAAAAAAGAAGAGAAACCTCCCGGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCGACGAATAGATTTGTATGCGAGATCTGTAGTAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAATTAAAGCAAAGGGCAAACAAAGAAGTAATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCATCAAGAGCATTAGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTAGCTGAGGAAAGTGCAAGAGCCATTACATCAAACCCCCCAATACTAATAGCAAATAATAATAATAATAATTATAATCAAAACCACCTTCTTCCTCCACTTTCTTCCATTGCCACTCCCAATATTAATTCTCAATTAAACTTCCAAATTACACAACAAACCCATTTCAATAATCCTCCCTTCTTAGATAATACCTCGTTTAATAATAATTCTCTAAAAAAAGAAAATCATCAATTACAAAGCAATAATAATAATAATGATAATAATAATATTCCCCCATGGTTAACCTTTCCCATTAATAATAATTCAACCTCAAATAATCATAATCACCATCAAATTATAAACCCTAATCATAATCATATTAATCTTGGTCCCACTTCTCTTCATCTAATACAAAGTGCTTCACCTTCTTCTCCACATATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGATCTACCATGAGCAGCAACAGCAACAGCAACAACAATAATAATAATAATAATGCTGAGCCACCACACACAATCATTCCCCATACAAATTGTAATTTTGGCCTTAACTTATCATCCACCACCACCTCCTCCTCCTCACGTGACATTCATCAGAATCAAATTTTGGAAGAAGCTGCAGCAGGGCTTTCTCATGCACTGCCATTCTACAGGAACAAAATTGCTGATTTTGAAGGAGCTGGGACTTCTTTTGAATTAGATCAATTTGGAGGGGTTTTTAAGAAAAACAATGATCATCATCATCATCATCAAGCTGCAGCTGGGCTCAGTACGAGAGATTTCTTGGGGTTGAGAGCTATTTCTCATACTGAATTCTTGAGTAATATTGCAGCTGCTGGTAATTTTAGTCATTGCATTAATAATAATCATAATGTTGGTGCTGCTCAGAATCCTCAAACTACTCAAATTCAAAATCAATCCACTTGGCAAGGTTAG 1584 38.01 MIKSLLLQHQSQAMEENLSNLTSASGEASACSGNHSDQIPTNYSGQFFSTPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPPILIANNNNNNYNQNHLLPPLSSIATPNINSQLNFQITQQTHFNNPPFLDNTSFNNNSLKKENHQLQSNNNNNDNNNIPPWLTFPINNNSTSNNHNHHQIINPNHNHINLGPTSLHLIQSASPSSPHMSATALLQKAAQMGSTMSSNSNSNNNNNNNNAEPPHTIIPHTNCNFGLNLSSTTTSSSSRDIHQNQILEEAAAGLSHALPFYRNKIADFEGAGTSFELDQFGGVFKKNNDHHHHHQAAAGLSTRDFLGLRAISHTEFLSNIAAAGNFSHCINNNHNVGAAQNPQTTQIQNQSTWQG* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35706524 35710144 + CsaV3_3G043830.1 Csa03g04077 524982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04077 527 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Csa03g04077 527 Gene3D Classic Zinc Finger 138 219 - -
Csa03g04077 527 Coils Coil 273 300 - -
Csa03g04077 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 491 - -
Csa03g04077 527 MobiDBLite consensus disorder prediction 41 67 - -
Csa03g04077 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 491 - -
Csa03g04077 527 MobiDBLite consensus disorder prediction 360 387 - -
Csa03g04077 527 Gene3D Classic Zinc Finger 63 135 - -
Csa03g04077 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Csa03g04077 527 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Csa03g04077 527 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Csa03g04077 527 SMART c2h2final6 84 106 IPR013087 -
Csa03g04077 527 SMART c2h2final6 161 181 IPR013087 -
Csa03g04077 527 SMART c2h2final6 126 156 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01294 Csa-Chr1:8215758 Csa03g04077 Csa-Chr3:35706524 1.16E-112 dispersed
Csa03g03266 Csa-Chr3:29869314 Csa03g04077 Csa-Chr3:35706524 7.73E-114 dispersed
Csa03g04077 Csa-Chr3:35706524 Csa06g03225 Csa-Chr6:27277593 2.90E-115 dispersed
Csa05g01292 Csa-Chr5:13726487 Csa03g04077 Csa-Chr3:35706524 3.00E-71 dispersed
Csa07g02025 Csa-Chr7:19726107 Csa03g04077 Csa-Chr3:35706524 1.46E-20 dispersed
Csa07g01699 Csa-Chr7:17501882 Csa03g04077 Csa-Chr3:35706524 9.09E-112 transposed
Csa03g04077 Csa-Chr3:35706524 Csa07g02385 Csa-Chr7:21971899 2.39E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31402 PF00096 zf-C2H2 0.0092 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04077 K25870 - csv:101204728 999.579