Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04077 | ATGATTAAAAGTTTGTTGCTTCAACATCAATCTCAAGCTATGGAGGAAAATTTGTCAAATTTAACTTCAGCTTCTGGTGAAGCCAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCAGGCCAGTTCTTTTCCACCCCACCACCACCAAAAAAGAAGAGAAACCTCCCGGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCGACGAATAGATTTGTATGCGAGATCTGTAGTAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAATTAAAGCAAAGGGCAAACAAAGAAGTAATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCATCAAGAGCATTAGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTAGCTGAGGAAAGTGCAAGAGCCATTACATCAAACCCCCCAATACTAATAGCAAATAATAATAATAATAATTATAATCAAAACCACCTTCTTCCTCCACTTTCTTCCATTGCCACTCCCAATATTAATTCTCAATTAAACTTCCAAATTACACAACAAACCCATTTCAATAATCCTCCCTTCTTAGATAATACCTCGTTTAATAATAATTCTCTAAAAAAAGAAAATCATCAATTACAAAGCAATAATAATAATAATGATAATAATAATATTCCCCCATGGTTAACCTTTCCCATTAATAATAATTCAACCTCAAATAATCATAATCACCATCAAATTATAAACCCTAATCATAATCATATTAATCTTGGTCCCACTTCTCTTCATCTAATACAAAGTGCTTCACCTTCTTCTCCACATATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGATCTACCATGAGCAGCAACAGCAACAGCAACAACAATAATAATAATAATAATGCTGAGCCACCACACACAATCATTCCCCATACAAATTGTAATTTTGGCCTTAACTTATCATCCACCACCACCTCCTCCTCCTCACGTGACATTCATCAGAATCAAATTTTGGAAGAAGCTGCAGCAGGGCTTTCTCATGCACTGCCATTCTACAGGAACAAAATTGCTGATTTTGAAGGAGCTGGGACTTCTTTTGAATTAGATCAATTTGGAGGGGTTTTTAAGAAAAACAATGATCATCATCATCATCATCAAGCTGCAGCTGGGCTCAGTACGAGAGATTTCTTGGGGTTGAGAGCTATTTCTCATACTGAATTCTTGAGTAATATTGCAGCTGCTGGTAATTTTAGTCATTGCATTAATAATAATCATAATGTTGGTGCTGCTCAGAATCCTCAAACTACTCAAATTCAAAATCAATCCACTTGGCAAGGTTAG | 1584 | 38.01 | MIKSLLLQHQSQAMEENLSNLTSASGEASACSGNHSDQIPTNYSGQFFSTPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPPILIANNNNNNYNQNHLLPPLSSIATPNINSQLNFQITQQTHFNNPPFLDNTSFNNNSLKKENHQLQSNNNNNDNNNIPPWLTFPINNNSTSNNHNHHQIINPNHNHINLGPTSLHLIQSASPSSPHMSATALLQKAAQMGSTMSSNSNSNNNNNNNNAEPPHTIIPHTNCNFGLNLSSTTTSSSSRDIHQNQILEEAAAGLSHALPFYRNKIADFEGAGTSFELDQFGGVFKKNNDHHHHHQAAAGLSTRDFLGLRAISHTEFLSNIAAAGNFSHCINNNHNVGAAQNPQTTQIQNQSTWQG* | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 35706524 | 35710144 | + | CsaV3_3G043830.1 | Csa03g04077 | 524982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04077 | 527 | Pfam | Zinc finger, C2H2 type | 84 | 106 | IPR013087 | - | |
Csa03g04077 | 527 | Gene3D | Classic Zinc Finger | 138 | 219 | - | - | |
Csa03g04077 | 527 | Coils | Coil | 273 | 300 | - | - | |
Csa03g04077 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 491 | - | - | |
Csa03g04077 | 527 | MobiDBLite | consensus disorder prediction | 41 | 67 | - | - | |
Csa03g04077 | 527 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 20 | 491 | - | - | |
Csa03g04077 | 527 | MobiDBLite | consensus disorder prediction | 360 | 387 | - | - | |
Csa03g04077 | 527 | Gene3D | Classic Zinc Finger | 63 | 135 | - | - | |
Csa03g04077 | 527 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 106 | IPR013087 | - | |
Csa03g04077 | 527 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 181 | IPR036236 | - | |
Csa03g04077 | 527 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - | |
Csa03g04077 | 527 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - | |
Csa03g04077 | 527 | SMART | c2h2final6 | 161 | 181 | IPR013087 | - | |
Csa03g04077 | 527 | SMART | c2h2final6 | 126 | 156 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01294 | Csa-Chr1:8215758 | Csa03g04077 | Csa-Chr3:35706524 | 1.16E-112 | dispersed | |
Csa03g03266 | Csa-Chr3:29869314 | Csa03g04077 | Csa-Chr3:35706524 | 7.73E-114 | dispersed | |
Csa03g04077 | Csa-Chr3:35706524 | Csa06g03225 | Csa-Chr6:27277593 | 2.90E-115 | dispersed | |
Csa05g01292 | Csa-Chr5:13726487 | Csa03g04077 | Csa-Chr3:35706524 | 3.00E-71 | dispersed | |
Csa07g02025 | Csa-Chr7:19726107 | Csa03g04077 | Csa-Chr3:35706524 | 1.46E-20 | dispersed | |
Csa07g01699 | Csa-Chr7:17501882 | Csa03g04077 | Csa-Chr3:35706524 | 9.09E-112 | transposed | |
Csa03g04077 | Csa-Chr3:35706524 | Csa07g02385 | Csa-Chr7:21971899 | 2.39E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31402 | PF00096 | zf-C2H2 | 0.0092 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04077 | K25870 | - | csv:101204728 | 999.579 |