Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04086 ATGGATTCTTTGTGGATATTTGTGCAGCTCATCACAGCTGCAGCTTTCATATCTTCCACAATCATAATCCTCAGAAACTTCATCATCCCCACCACACCATTGTCATCTTCTTCAAACTCCTTCACCTCCTCCAACAATCCTTCACTTCCTTCCGGCTCCCTCGGTCTCCCCTTCGTTGGTGAAACCCTCCACTTCGTCTCTTCTGCTTACTCTCACCGCCCCGACACCTTCATGGACACACGTCGCCGACGGTATGGGAAGGTTTTCAAATCGCATATATTTGGAAGTCCAACAATAGTTTCAACAGATGGTGAAGTGAATAGGTTTATTCTACAAAGTGATTCAAAGTATTTTGTGCCATCTTATCCAAAATCTGTGACAGAGTTGATGGGAAAATCTTCTATTTTGCTTATCAATGGCACTTTACATAGAAGAATTCATGGTCTTATTGGAGCTTTTTTCAAATCATCTCATCTCAAAGCTCAAATAACCTTAGACATGCAAAAATATCTTCACAAATCCATCTCTACTTGGACTAGTACTTGTCAACAGAATCCTATCCACATTCAAGATGAAGCCAAAAATATTGCCTTTGAAGTACTAGTAAAGACACTGATCAGTTTGGAGAGTGGTGAAGAAATGGAATTTCTGAAGAAACAGTTTAATCAATTCATCGCTGGGATTATGGCTTTCCCAATAAACATCCCAGGAACCACACTTTACAGATCATTACAGGCAAAAAGAAAAATGGTGAAGTTAGTGGAAGAAATAATAGAAGGAAGAAGAAAGAAGAAGAAGATCAAGAGTGAAAAATGGAGTAACAATCACAATAATAATAAGAATGGAGTTGGAATAATAAATGATGTTGTGGATGTTTTGTTGAATGATGGAAGCCAACAAGTAACAGATGAAGTTATAGCTCATAATATGATTGATATGATGATTCCAGGCCAAGATTCTGTCCCAATCCTTATCACTTTGGCCATTAAATACCTTTCTGATTCTCCCTCTGCCCTTCAACAATTAACGGAAGAGAACATGGAATTGAAAAGACAGAAAACTCAGTTTGGAGAGCCATTGAAGTGGAGTGATTACTTGTCTTTACCATTTACACAAAATGTGATAACAGAGACGTTAAGGTTAGGAAACATAATAACAGGAGTGATGAGAAAGGCAATGAAAGACATTGAAATAAAAGGATATTTAATTCCAAAAGGATGGTGTGTACTTGCATATATTAGGTCAGTTCATGTCGATGAAAACCACTTTGAAAGCCCTTACCATTTCAATCCATGGAGATGGCAAGGTAAAGACTCAAATAATTTGAATTTCAGTCCTTTTGGAGGAGGACAAAGGTTGTGCCCAGGCCTTGAATTAGCCAGATTAGAAGCTTCCATTTTCTTACATCACTTCGTTACTGAATTCAGGTGGGTGGCCGAGGAAGACAATATTATCAACTTCCCAACAGTAAGAATGAAGAAGAGAATGGCAATTTGGGTAAAAAAGAGAGATCTTTAA 1518 38.08 MDSLWIFVQLITAAAFISSTIIILRNFIIPTTPLSSSSNSFTSSNNPSLPSGSLGLPFVGETLHFVSSAYSHRPDTFMDTRRRRYGKVFKSHIFGSPTIVSTDGEVNRFILQSDSKYFVPSYPKSVTELMGKSSILLINGTLHRRIHGLIGAFFKSSHLKAQITLDMQKYLHKSISTWTSTCQQNPIHIQDEAKNIAFEVLVKTLISLESGEEMEFLKKQFNQFIAGIMAFPINIPGTTLYRSLQAKRKMVKLVEEIIEGRRKKKKIKSEKWSNNHNNNKNGVGIINDVVDVLLNDGSQQVTDEVIAHNMIDMMIPGQDSVPILITLAIKYLSDSPSALQQLTEENMELKRQKTQFGEPLKWSDYLSLPFTQNVITETLRLGNIITGVMRKAMKDIEIKGYLIPKGWCVLAYIRSVHVDENHFESPYHFNPWRWQGKDSNNLNFSPFGGGQRLCPGLELARLEASIFLHHFVTEFRWVAEEDNIINFPTVRMKKRMAIWVKKRDL* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35819170 35824357 + CsaV3_3G043920.1 Csa03g04086 524991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04086 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Csa03g04086 505 PANTHER CYTOCHROME P450 26 25 497 - -
Csa03g04086 505 Gene3D Cytochrome P450 38 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 SUPERFAMILY Cytochrome P450 46 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90D1 25 497 - -
Csa03g04086 505 Pfam Cytochrome P450 50 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04086 505 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04086 Csa-Chr3:35819170 Csa06g03288 Csa-Chr6:27579040 6.50E-141 dispersed
Csa01g00777 Csa-Chr1:4929995 Csa03g04086 Csa-Chr3:35819170 5.09E-72 transposed
Csa03g00357 Csa-Chr3:2950595 Csa03g04086 Csa-Chr3:35819170 3.79E-87 transposed
Csa05g00809 Csa-Chr5:5807093 Csa03g04086 Csa-Chr3:35819170 5.36E-131 transposed
Csa05g01875 Csa-Chr5:21981719 Csa03g04086 Csa-Chr3:35819170 1.83E-88 transposed
Csa06g00029 Csa-Chr6:208797 Csa03g04086 Csa-Chr3:35819170 1.97E-90 transposed
Csa03g04086 Csa-Chr3:35819170 Csa07g02396 Csa-Chr7:22043310 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04086 K12638 - csv:101212581 946.036