Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04088 ATGGCAATGGAGGTGAAGCAAAAGTTCTTCCATGGAACGCTTGAGGTTACTGTCTTTCATGCAACGGCATACGCGCCCTCTTCACCTTTGGATTGCCTATTTGCTGGTGGCAAGTGTAGCTATGTGACAATTAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACAGGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGTGCACATCCATTGACTTCTACCGTCACCATTACATTGAAAACATCTCGTTCTGTCTTGGGTAAATTCTATATCCAAGCTCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGTTTCTTTCCGCTTCTTATGGAAAATGGGAAGCCAAGTCCGGAGCTCAAACTTCGATTCATGTTGTGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACGTTTCCTTTAAGGTCCAACTGTCATGTGACACTATATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTGAGGGACTCTCAGACCGATATACCCTATGCTTTAGGAGTAAAGCTTGGAGAGTTGTTGAAGCAGAAGGCAGACGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCTCTTCCCATCATCAAGAATGCCGGGATAATGAACACACATGATGAAGATGCTCGGGCATATTTCTTGCACTCAAAAGTCATATGTAGGTTGTGCCCCAAATTGCATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACAAAACAGGGAAATTATGAGTTTCATTGGTGGTTTAGATCTTTGTGATGGTCGCTACGATACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGTCGTGATTTCTATCAGACGAGTATATCGGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCGGATGCTTCGTTGTTAGTACCGACAAGCATCTTATTAAAATTGATGCCCCAACTCGAATCAAACACAAACCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACCATTTGTCTGCCAGTCAAATGTTCAGAAACATGACCATTGAACGAACCATCCACGAAGCTTATGTTGAAGCTATCAGGCGAGCTGAGAGATTTATTTACATCGAAAACCAATACTTTATTGGAGGGTGTCACTTTTGGGACAGAGATCAACACTGTGGGTGCACAAATTTGATACCGATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGGTTCGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGATCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAGGCAATCCAAGAAACTGGGGAAAAGGCCCATCCAAGAGATTACTTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGAGAAAGTGGGACTTCATTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAGCATCGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATCTGTACATTCTGATTGGATCCGCAAACGTGAATCAAAGGTCCATGGACGGAGAGCGAGATACAGAGATAGCAATGGGATGCTACCAAATAGAAAACGAGGGAGAAGAATTACCCAATGGAAGAGACATTTCAAAATTCCGATTGTCGCTTTGGTACGAACATACAGGAGGATTCGAAGAAGTGTTCTTAAACCCAGAAAGTTTGAAATGCGTTGAAAGGGTTCGATCGATAGGGGATAAATCGTGGAAAATTTACAGCGGAGAAGAAGTTGAAGATATGAAAGGGGTTCACATGGTAACGTACCCAGTGAAGGTGAAAGAAGATGGAAGGATGGAGGATTTGGAAGAAAATGGAGGGCATTTTCCTGATACGAAATGCCCAATTAAAGGAAGAAGATCAATGATGTTGCCACCCATTTTCACAACCTAG 2286 42.83 MAMEVKQKFFHGTLEVTVFHATAYAPSSPLDCLFAGGKCSYVTIKIDNKEVAQTSHEQDRVWNQTFRVLCAHPLTSTVTITLKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKPSPELKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVKLGELLKQKADEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINAQNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCRDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTNPQKDWNVQVFRSIDHLSASQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHFWDRDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGSPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFIPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAMGCYQIENEGEELPNGRDISKFRLSLWYEHTGGFEEVFLNPESLKCVERVRSIGDKSWKIYSGEEVEDMKGVHMVTYPVKVKEDGRMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35829902 35833119 - CsaV3_3G043940.1 Csa03g04088 524993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04088 761 Pfam C2 domain 12 111 IPR000008 -
Csa03g04088 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Csa03g04088 761 Gene3D C2 domain 2 131 IPR035892 -
Csa03g04088 761 PANTHER PHOSPHOLIPASE D 7 761 IPR015679 -
Csa03g04088 761 Pfam Phospholipase D Active site motif 607 633 IPR001736 GO:0003824
Csa03g04088 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
Csa03g04088 761 Gene3D Endonuclease Chain A 446 652 - -
Csa03g04088 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa03g04088 761 SUPERFAMILY Phospholipase D/nuclease 144 409 - -
Csa03g04088 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824
Csa03g04088 761 SMART pld_4 606 633 IPR001736 GO:0003824
Csa03g04088 761 SMART pld_4 300 335 IPR001736 GO:0003824
Csa03g04088 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 129 IPR035892 -
Csa03g04088 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Csa03g04088 761 PANTHER PHOSPHOLIPASE D ALPHA 4 7 761 - -
Csa03g04088 761 Gene3D Endonuclease Chain A 173 432 - -
Csa03g04088 761 SUPERFAMILY Phospholipase D/nuclease 424 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04088 Csa-Chr3:35829902 Csa04g00153 Csa-Chr4:863917 0 dispersed
Csa03g04088 Csa-Chr3:35829902 Csa07g02159 Csa-Chr7:20516256 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04088 K01115 - csv:101206396 1585.85