Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04090 ATGAGTCGGGATCTGAAGCGAGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTCGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGTTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACTGATTCCTGTTCACAGATGATTCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGTTCACCGAGTGGGGCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAACGATCACAACCAAAAGTTCTTCGTTTGAACCTGGTTGGGTCTCCAAAGAAGGAACCAGAAGTTCCCTCTCCGTCACCTTCTGATATATATGAAGGGTCTGAAAGCCATCAAAAAGAAAATAATGACCCTCTAGATTTTATACGGGGACCAGTTGTGACTCCCAGTAGCAGTCCAGAATTGGGCACACCTTTTACTGCTACTGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCTGATATTGAGAATTTATCTGTGTCGTCTGCAAGTTTAAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATTAGTGGAAGGTCACAGAGATGCGATGATAGGAATCAAGCGTCAACAAGAAATTCTTTTCTACTGAAGTCTTCTAAACTTGACAGAGAATCAAGTATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCACGGGGATGTACGAGATGCAGTTTCATTATCCAGGAACACGCCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCTGAACTGGAGCTTGCTACTGGTGGATTTTCACAAGCTAACTTTTTGGCTGAAGGAGGATATGGATCTGTCCACAGAGGGGTACTCCCAGATGGACAGGTGGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAGCATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCACTTGAATGGTCTGCACGGCAAAAAATTGCCGTGGGAGCTGCAAGGGGGTTACGATATCTCCACGAAGAATGTAGAGTTGGTTGCATTGTTCATCGGGATATGCGGCCAAACAACATTCTTATCACACATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCTGATGGAGATACCGGTGTTGAAACAAGAGTTATCGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGGGTTGTACTGGTGGAGCTAATTACTGGAAGAAAAGCAGTAGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCCCGCCCCCTGCTGGATGAATTTCTCATTGATGAACTGATTGATCCAAGGTTGGTAAATAGCTTTGCAGAGCATGAAGTATACTGTATGCTGCATGCTGCATCATTATGCATCCGAAGAGATCCCAACGCAAGGCCTCGTATGTCACAGGTTTTACGAATTCTGGAAGGCGACCTCGTCATGGATGCTAATTACTTTTCCACTCCCGGATATGATGTGGGAAACCGGAGTGGTCGGATGTGGACTGAGCAACAGCAGCAGCCACAAAACTACAGTGGCTTGTTATCGGATGAGACTGTAGAAAGGTTCAATGAAAAGGTCTGTGTTGAAAGTTTAAGACCAGGTTACTGGGAAAGAGACAAGACAAGGAGGACTTCCAGTGGAAGTGAATTGTAA 2256 43.79 MSRDLKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEVPSPSPSDIYEGSESHQKENNDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDRNQASTRNSFLLKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLVNSFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYFSTPGYDVGNRSGRMWTEQQQQPQNYSGLLSDETVERFNEKVCVESLRPGYWERDKTRRTSSGSEL* 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35841358 35847891 - CsaV3_3G043960.1 Csa03g04090 524995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04090 751 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Csa03g04090 751 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04090 751 Gene3D HUPs 5 151 IPR014729 -
Csa03g04090 751 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Csa03g04090 751 PANTHER OS01G0253100 PROTEIN 15 710 IPR045271 GO:0004714|GO:0006468
Csa03g04090 751 Gene3D Transferase(Phosphotransferase) domain 1 481 685 - -
Csa03g04090 751 CDD STKc_IRAK 411 677 - -
Csa03g04090 751 CDD USP_Like 19 142 - -
Csa03g04090 751 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 710 - -
Csa03g04090 751 MobiDBLite consensus disorder prediction 175 254 - -
Csa03g04090 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Csa03g04090 751 MobiDBLite consensus disorder prediction 220 254 - -
Csa03g04090 751 SUPERFAMILY Protein kinase-like (PK-like) 389 683 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02911 Csa-Chr1:25529067 Csa03g04090 Csa-Chr3:35841358 0 dispersed
Csa03g04090 Csa-Chr3:35841358 Csa03g04172 Csa-Chr3:36622788 0 dispersed
Csa03g04090 Csa-Chr3:35841358 Csa05g02558 Csa-Chr5:26969429 3.83E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78077 PF07714 PK_Tyr_Ser-Thr 1.00E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04090 - - csv:101206876 1502.26