Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04114 ATGGCAAGTTTTCTTTTGATATCTTTTGTTACGGCTATGGTTTTATTTTCATCTTTCAATGTCTATGTGGCTGTTGATTTCTTAACATCTTCTCAAAACCTCACTCATGGCAACACCTTGGTCTCTGAAAAAGGAATTTTTGAGCTGGGTTTCTTTCGTCCAGGAATCTCTAACAACCGTTACTTGGGAATCTGGTACAAAACCATCCCAATCCCTACTGTTGTTTGGGTTGCCAACAGAGAAACTCCACTCGTAGACTTTTCCAGTATATTAATTATAAACACCACAGCGAATCATGTTGTTCTCATCCAAAACAAAACTGTTATTTGGTCAGCAAAATCGTTGAAACCAATGGAAAATCCCAGGCTACAGCTTTTAGACACTGGAAATCTAGCCCTGAAAGATGGAAAGTCAGAGGAGATTTTGTGGCAAAGCTTTGATTATCCAACTGATACATTGTTGCCAGGAATGAAGCTGGGATGGGATTATGAAAATGGCATAAACAGACGATTATCAGCTTGGAAAAACTGGGACGACCCATCTCCTGGAACATTGATATTGGAAATGGAAAATCATAGCTACCCAGAACTCGCCATGTGGAATGGTACACAAGAAATCGTGAGAACTGGACCTTGGAATGGGATGCGGTTCAGCTCCAAATCCATTTCTGGTCTTCCAATTTTAGTGTACCATTATGTGAACAATAAAAATGAGCTTTATTTCAGCTTCCAGCTCATAAACAATTCTCTGATTGGTAGAATGGTATTGAACCAATCCAGGTCCAGGAGAGAGGCCTTACTGTGGTCAGAAGCTGAGAAAAACTGGATGATATATGCCACGATTCCAAGAGATTATTGCGACACATACAACGTTTGTGGTGCTTATGGGAATTGTGACATTGAGAATATGCCTGCTTGTCAATGTCTGAAAGGGTTCCAGCCAAGGGTGCTAGAGAATTGGAATCAAATGGATTATACAGAAGGGTGTGTCAGAACTAAGCATCTGAATTGCTGGGATGAAGTTGGGTTTGCAAAGTTGCCAGGGATGAAATTGCCTGACACTACATATTCATGGGTTAATGAAAGCATGAGTTTAAGTGAGTGCAGGGAAAAATGTTTGAGGAATTGTTCTTGTATGGCATTTGCAAATACAGATATTAGAGGATTAGGTAGTGGGTGTGCCATTTGGTTAAATGATCTTCTTGATATTAAAGTTGTTATCAAAGGTGGCCAAGACTTGTATGTTCGAATGCTTGCTTCTGAGTTAGACACAACGAAGGCGAATTTGGTTATCATTGGCGTTATTGTTTCTGCTACGCTCCTTATAATTGCTGCCCTGGTTTTGGTTGGATTTTACATTATCAAAAGAAGGAAAATCCTTGAAGTTGAGAAACTTGATGTACAAGAGGAAGACTTGGAGCTCCCGTTATTTGACCTGTCAACAGTATCAAATGCTACAGACAATTTTTCAAACTCCAAAAAACTTGGAGAAGGTGGCTTTGGTGTAGTATTCTGGGGTAAACTCAAAGATGGACGAGAAATTGCTGTGAAAAGGCTTTCTAACTATTCAAGACAAGGAACTAATGAATTCAAGAATGAAGTAAAACTTATAGCTAAACTTCAGCATAGGAATCTTGTAAAGCTTCTGGGTTGCTGCATCCAAGAGAGAGAGAAAATGTTGATTTATGAATACATGCCTAATAAGAGCTTGAGCTCTTTGATATTTGATCCTAATGGAAGGAAACTCTTAGATTGGTCAAAGCGATTCAATATCATATGTGGAATAGTTAGAGGGATTCTTTACCTTCATGAAGATTCCAGGTTGAGGATTATTCATAGAGATCTCAAACCAAGCAATATCTTGCTTGATATTGACATGAACCCCAAAATCTCAGATTTTGGAATGGCTAGAACTTTTGGTGGAGATCAAACCGAAGGAAATACTAGGAGAGTCGTCGGAACATATGGTTATATGGCACCAGAATATGCTATAGATGGACAATTTTCAATAAAGTCAGATGTATTCAGTTTTGGCATACTACTATTAGAAATTATAAGTGGACAGAAGAATCAAGGATTTTATCGTCCAAACCAAACTCTCAATCTCATCGGACATGCATGGAAGTTATGGAATGAAGGAAGAGCATTGGAATTGATTGACCCCTCAATTGGAGAGTCATATACTCTATCTGAAGTATTGAGATGCATCCATGTTAGTCTTTTATGCTTGCAACAACAGCCAGAAGATAGACCAATCATATCAGATGTGATTTCAATGCTAAATTGTGAGAGTGCCTCGAAGTTGATGCAACCAAAACAACCAATATATTGCATGGAAATGGATTCACTTAAAGAGGATTCTATTTCAAGCAAGAATGAAGCTTCTAGTTCTACCACCAATGAATTAACTGTTACTGTTGTAGAGGCTAGGTAG 2433 38.59 MASFLLISFVTAMVLFSSFNVYVAVDFLTSSQNLTHGNTLVSEKGIFELGFFRPGISNNRYLGIWYKTIPIPTVVWVANRETPLVDFSSILIINTTANHVVLIQNKTVIWSAKSLKPMENPRLQLLDTGNLALKDGKSEEILWQSFDYPTDTLLPGMKLGWDYENGINRRLSAWKNWDDPSPGTLILEMENHSYPELAMWNGTQEIVRTGPWNGMRFSSKSISGLPILVYHYVNNKNELYFSFQLINNSLIGRMVLNQSRSRREALLWSEAEKNWMIYATIPRDYCDTYNVCGAYGNCDIENMPACQCLKGFQPRVLENWNQMDYTEGCVRTKHLNCWDEVGFAKLPGMKLPDTTYSWVNESMSLSECREKCLRNCSCMAFANTDIRGLGSGCAIWLNDLLDIKVVIKGGQDLYVRMLASELDTTKANLVIIGVIVSATLLIIAALVLVGFYIIKRRKILEVEKLDVQEEDLELPLFDLSTVSNATDNFSNSKKLGEGGFGVVFWGKLKDGREIAVKRLSNYSRQGTNEFKNEVKLIAKLQHRNLVKLLGCCIQEREKMLIYEYMPNKSLSSLIFDPNGRKLLDWSKRFNIICGIVRGILYLHEDSRLRIIHRDLKPSNILLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGQKNQGFYRPNQTLNLIGHAWKLWNEGRALELIDPSIGESYTLSEVLRCIHVSLLCLQQQPEDRPIISDVISMLNCESASKLMQPKQPIYCMEMDSLKEDSISSKNEASSSTTNELTVTVVEAR* 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36054625 36057911 - CsaV3_3G044200.1 Csa03g04114 525019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04114 810 SUPERFAMILY Protein kinase-like (PK-like) 472 760 IPR011009 -
Csa03g04114 810 SMART blect_4 31 149 IPR001480 -
Csa03g04114 810 Gene3D - 20 146 IPR036426 -
Csa03g04114 810 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Csa03g04114 810 Pfam Protein kinase domain 490 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04114 810 Pfam D-mannose binding lectin 73 175 IPR001480 -
Csa03g04114 810 ProSiteProfiles Protein kinase domain profile. 489 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04114 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 807 - -
Csa03g04114 810 Gene3D Transferase(Phosphotransferase) domain 1 565 777 - -
Csa03g04114 810 CDD STKc_IRAK 495 761 - -
Csa03g04114 810 Pfam Domain of unknown function (DUF3403) 766 810 IPR021820 GO:0004674
Csa03g04114 810 SMART ntp_6 338 417 IPR003609 -
Csa03g04114 810 CDD B_lectin 34 149 IPR001480 -
Csa03g04114 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Csa03g04114 810 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Csa03g04114 810 Gene3D Phosphorylase Kinase; domain 1 463 564 - -
Csa03g04114 810 SMART serkin_6 489 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04114 810 Pfam PAN-like domain 341 403 IPR003609 -
Csa03g04114 810 CDD PAN_AP_plant 334 416 - -
Csa03g04114 810 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Csa03g04114 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 180 IPR036426 -
Csa03g04114 810 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Csa03g04114 810 PANTHER - 24 807 - -
Csa03g04114 810 PIRSF SRK 1 810 IPR024171 GO:0004674
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00583 Csa-Chr3:5050849 Csa03g04114 Csa-Chr3:36054625 0 dispersed
Csa07g00402 Csa-Chr7:2935155 Csa03g04114 Csa-Chr3:36054625 6.86E-159 dispersed
Csa07g02233 Csa-Chr7:20963946 Csa03g04114 Csa-Chr3:36054625 7.82E-151 dispersed
Csa03g04114 Csa-Chr3:36054625 Csa03g04115 Csa-Chr3:36063471 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78082 PF00069 Pkinase 2.50E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04114 - - csv:116402699 1615.13