Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04115 ATGGCAAATGCTTCACCAACTCTGTTTCTGTTTCTGTTTCTGTCTCTGTTTCTCTTCTTATCACCGTCTACGGCTGTTGATTTCATAACTTCCTCACAAAACCTTACCTATGGCGACACTCTCGTCTCCACAAAAGGCTTTTTCGAACTGGGTTTCTTTACCCCAGGAAATTCCACCAACCGTTACTTGGGAATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCAGAAATTCTTCCGCCGTTGCTGTTCTCAAGATCAACTCTACCTCCAGCGATCTGTTCCTTTTCGAGAATGACGCTGTTGTTTGGTTTGGAAAATCGTTGAAACCAGCCAAAACTCCCAAGCTACAGCTCTTAGACAATGGAAATCTGTTGTTGAAAGACGCAGAATCTGAGGAAACTTCATGGCAAAGCTTTGATTACCCAACCGATACATTACTCCCCGGAATGAAACTCGGATGGGACTTCAAAAACGGAATCCAACGGCGATTATCCGCATGGAAAACCTCTGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACCAGCTACCCAGAACCAGTGATGTGGAATGGGTCGAGTGAGTACATGAGAAGCGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACATCGGCGTTACCGATTTTAGTATACAGCTATGTAAACAACAAATCCGAGCTGAGTTACAGCTACGAGCTCATCAACTCTTCGTTAATCGGAAGAATGGTGTTGAACCAAACGATATTAAGAAGAGAAGCTTTGTTATGGTCTGAACCTGAGAAAAATTGGAAGCCCTATGCGGCTATGCCAAGGGATTACTGCGATACATATAGTGTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTTCCTGCTTGTCAATGTCTATTTGGATTTCATCCTAACGTACAAGAGAAATGGAATTTGATGGACTATACTGAAGGGTGTGTGAGGAATAAGCCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGTTGCCAGGGTTGAAATTGCCTGATACAAAACAATCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGAAAAGTGTTTGAGGAATTGTTCTTGTGTGGCTTTTGCTAATACTGATATTAGAGGATCTGGGAGTGGTTGTGCTATTTGGTTTGGGGAACTTGTTGATATCAAAGTTGTTCGAAGAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCAGTTGCCGTCGGTGTTATTGTCGGAGCAGCGGCTCTATTGATTCTTGGTTTGCTTCTGATTGGGTTTTACGTGATCAGAAGCAAAAGAAGAAAGCTGGAAGCAACAGGTGCAGGAAAGGATCTTGAAGGGCAAGAAGACGATTTGGAGCTTCCATTATTCAACTTAGCTACAATATCAAATGCCACCGACAATTTTTCAAACTTCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTAGGGGTAGACTTACTGATGGGAAAGAAATTGCAGTTAAGAGGCTTTCAAGCTATTCAAGGCAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGACTCTGCTAGAAAGAAGCTTTTAGATTGGTCGAAACGATTCAATATCATATGCGGAGTAGCTCGAGGTATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGGGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACCTAAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACATTTGGTGGGGATCAAACCGAAGGAAATACTCGGAGAGTGGTCGGAACATATGGGTATATGGCGCCAGAATACGCCATAGATGGACAATTTTCCATTAAGTCGGACGTTTTTAGTTTTGGAATTCTAATGTTGGAAATCATAAGTGGAGAGAAAAATAGAGGTTTTTTCCGTCCTAACCACGCTCTCAACCTGATCGGCCATGCATGGAAGTTATGGAATGAAGGAAAACCATTAGAGTTGATTGATGCAAGCATTGGAGAATCATATGCATTATCAGAAGTGTTGAGATGCATACATGTTAGTCTTTTGTGCTTGCAACAACTACCTGAAGATCGGCCAACCATGTCAAATGTAGTCTTAATGCTAAGTAGTGAGGGCTCATTGGCACAGCCAAAGCAACCAGGTTTCTACATGGAAAGAGATTCTCTTGAAGTATTTTCTGTTTCTGGCAAGAATGAATCTTCTATTACAAATGAATTAACTATTACCCTTTTGGAGGCTAGATAA 2445 41.23 MANASPTLFLFLFLSLFLFLSPSTAVDFITSSQNLTYGDTLVSTKGFFELGFFTPGNSTNRYLGIWYKIIPVRTIVWVANRENPIRNSSAVAVLKINSTSSDLFLFENDAVVWFGKSLKPAKTPKLQLLDNGNLLLKDAESEETSWQSFDYPTDTLLPGMKLGWDFKNGIQRRLSAWKTSDDPSPGSLTMEMMNTSYPEPVMWNGSSEYMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTILRREALLWSEPEKNWKPYAAMPRDYCDTYSVCGAFGSCDIEQVPACQCLFGFHPNVQEKWNLMDYTEGCVRNKPLNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECREKCLRNCSCVAFANTDIRGSGSGCAIWFGELVDIKVVRRGGQDLYVRMLASELETKKTSSVAVGVIVGAAALLILGLLLIGFYVIRSKRRKLEATGAGKDLEGQEDDLELPLFNLATISNATDNFSNFNKLGEGGFGAVFRGRLTDGKEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDSARKKLLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDIDLNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILMLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDASIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSEGSLAQPKQPGFYMERDSLEVFSVSGKNESSITNELTITLLEAR* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36063471 36068021 - CsaV3_3G044210.1 Csa03g04115 525020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04115 814 Pfam D-mannose binding lectin 74 178 IPR001480 -
Csa03g04115 814 SMART serkin_6 497 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04115 814 Gene3D Transferase(Phosphotransferase) domain 1 573 779 - -
Csa03g04115 814 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 811 - -
Csa03g04115 814 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Csa03g04115 814 SUPERFAMILY Protein kinase-like (PK-like) 482 768 IPR011009 -
Csa03g04115 814 SMART blect_4 32 152 IPR001480 -
Csa03g04115 814 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Csa03g04115 814 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Csa03g04115 814 SMART ntp_6 341 420 IPR003609 -
Csa03g04115 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Csa03g04115 814 Pfam Domain of unknown function (DUF3403) 769 814 IPR021820 GO:0004674
Csa03g04115 814 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Csa03g04115 814 CDD PAN_AP_plant 337 419 - -
Csa03g04115 814 CDD STKc_IRAK 503 768 - -
Csa03g04115 814 PANTHER - 25 811 - -
Csa03g04115 814 CDD B_lectin 35 152 IPR001480 -
Csa03g04115 814 Gene3D - 23 149 IPR036426 -
Csa03g04115 814 Gene3D Hepatocyte Growth Factor 337 420 - -
Csa03g04115 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Csa03g04115 814 ProSiteProfiles Protein kinase domain profile. 497 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04115 814 Pfam Protein tyrosine and serine/threonine kinase 501 766 IPR001245 GO:0004672|GO:0006468
Csa03g04115 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 183 IPR036426 -
Csa03g04115 814 Pfam PAN-like domain 340 406 IPR003609 -
Csa03g04115 814 Gene3D Phosphorylase Kinase; domain 1 472 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00668 Csa-Chr1:4295378 Csa03g04115 Csa-Chr3:36063471 6.68E-88 dispersed
Csa01g01148 Csa-Chr1:7120780 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa01g01149 Csa-Chr1:7126345 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa01g01158 Csa-Chr1:7179029 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa03g00584 Csa-Chr3:5055622 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa05g01147 Csa-Chr5:11773292 Csa03g04115 Csa-Chr3:36063471 2.94E-105 dispersed
Csa06g03569 Csa-Chr6:28918339 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa03g04114 Csa-Chr3:36054625 Csa03g04115 Csa-Chr3:36063471 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78083 PF07714 PK_Tyr_Ser-Thr 3.30E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04115 - - csv:101216184 1585.85