Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04130 ATGATGTTATCTGCATCGCCATCGACGATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAGGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTAAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAACGTCTTTAATGGAAAGGAGGATGCAATAAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAACAAATAGAGATCAAGATGATGAATCGCCTTACATGGTAGCTTCAAAAAATGATAATAGAGATCAAGTGAATGTTGCTTCTGCTTTACTTTCACATATTCGAAGCTCCAACTGGGAGGACAATATCAGTTATTTTCTTCAGAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGGAACTATACAGTCAAACAGTGGGATGGAGGCATGTATCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAACGAGCCTTCGGTTATTCACAGTCTCCAGCGAAGATTTTCTCAGGATAAAATTTATAGTAATGCAGGGTCAGTTTTGATTGCAATCAATCCGTTGAAAGACACTAAACAGTATGGAAATGAATTAATTACAGCCTATAGACAAAGAGTTATGAACAACCCTCATGTTTATGTTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAACCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGCAAAACTGAGACAGCAAAAGTTGCCGTTCAATACCTGACTGCTCTTGGAGGTGGCAACGGCATAGACGATAGAATCCCACAGGCAAATGTTATACTGGAAGCGTTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTCGTCAATGGTGAGAGATCATTTCATGTCTTTTATCAACTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGCCCAGTGAGTACAGTTACCTTAATCAGAGTGAATGTCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATACTCTTGTGGAAGCCCTAGATATACTTAAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTTTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTCGCTAATGCTGCCAAGCTGATGGGTTGCAGTCCCAATGAGCTTAAGTTAGTTTTGTCGACCCAGAAAGTGCAATCAGGCAACAATAGTATTGCTACAAAAATGACTTTACGACAGGCAACCGATGCTAGAGATGCTTTGGCAAAATTTATCTATGCGAGCTTGTTTGACTGGGTTGTAGAACAGATCAACAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATCCTAGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAATTTTGTATCAATTATGCAAACGAGAGACTGCAGCAGCATTTTTGTAGGCACGTGTTCAAACTTCAGCAAGAGGACTACGAATTGAATGGTGTTGATGGCACAAAAGTCAACTTTGAAGACAATCTACAGTGTTTGAATCTTATTGAGAAGAAACCACTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTACCAAAGCTACTGATCTGACATTTGCTAATAAACTAAAGCAACACTTTAAATCTCAACCTCACTTCAAAGGGGAAAGAGGCAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTATACGATACAAATGGGTTTTTGGAGAAGAACAGAGATCTGCTGCATTCAGATGCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAAATGATTAACCAGTCCCACAAACCAACAGTTTCAATGTGCTCTACAAAAATAGTAGAATCCCCTGAGCCAGGTGTTGGAACCAAGTACAAGGTTCTACTATTTGACCTATTTCATAAATTGGAGAGCACCAACCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTCATTCGAGGAGGACCTTGTCTTACAACAGCTTAGATACTTTGGAATTTTGGAGGTTGTCAGAATTTCAAGATCTGGATATCCTACCAGGATGACGCATCAAGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACCAGTGTATCTCAAGATTCATTGAGTATATCAATTGCTGTTCTGCAACAATTTAATGTCCACCCAGAGATGTACCGTGTTGGCTATATCAAACTATTTTTCCGTACAGGGCAGATTAGGGCATTGGATGAAAGGAAGAAGCAAGTTATGCAGGGCATCTTAGGAATACAAAAGTACTTTCGTGGTTGCCATGCCCGTGGAAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCGTGAAGAGGTTCTCATTTGTTGTGTATGCCTTCAGCGTTCCTAAGAAGGTCTATGAAGTTCAGGCAGTCATACGATTACAATCTGTAATACGTGGTTCGTTGGCTCGAAAGCATTTAAGCATGCTTGATTCAAAGAAGTTTATTGAAAACAAAAAATCTAAATTGAACAAAGGCAGAAGGGTTTCAGAGGAAAAGTTTCAAGAACGGGCTCAATCCCTACCAACAAGTCTGACTGAGCTTCAAAAGAGGGTTGTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCCGCACTGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGCTAGAATATGAAGCTAAGATGAAATCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAGAAGACACTTGCTGCTGAAAATGCAGCCCCACCTGGAAGAGTTGATGCTGGTAACTCACCACCTCACTATTACGATTCTGAGGACATGACGTCCATGGGATCTCGAACTCCTGGTGGTACAACACCTACGAAAGCCTCTGGAATCTCTGAAGGGGGAACAGGCCGAGAAATGAATGGTACTGTAGTTGCAGTCAACAATCTTGTAAAGGAATTTGAACAGCGTAAAACTGCATTTGACGATGATGCTAAAGCTTTAATTGAAGCAAAATCAGGTTCTGATGCAAATCCAGATGAAGAATACCGTAAAATTAAAGCCCGATTTGAAGCATGGAAAAAAGAGTACAAGGCTAGATTACGGGAAACAAAAGCTAAGGTTCATCATAAACATGGTCATTTCGAAGTTGATAGGCTTCGTCGAAAATGGTGGGGAAAGTTCAGCTCAAAAGCATCATAA 3609 41.4 MMLSASPSTIARSSLEEMLDSLRRRDEIERPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGKEDAIRKENGLGNFAFRRTNRDQDDESPYMVASKNDNRDQVNVASALLSHIRSSNWEDNISYFLQKKLRVWCQLPTGQWELGTIQSNSGMEACIMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSQDKIYSNAGSVLIAINPLKDTKQYGNELITAYRQRVMNNPHVYVIADSAYSAMMQDEVNQSIIISGESGAGKTETAKVAVQYLTALGGGNGIDDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVPSEYSYLNQSECLVIGGVDDARKFHTLVEALDILKFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTQKVQSGNNSIATKMTLRQATDARDALAKFIYASLFDWVVEQINKSLKPRTEHSGRSINILDFYGFESFKKNGFEQFCINYANERLQQHFCRHVFKLQQEDYELNGVDGTKVNFEDNLQCLNLIEKKPLGVLALLDEELNFTKATDLTFANKLKQHFKSQPHFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDAIQLFSSCTCKLLQLLASKMINQSHKPTVSMCSTKIVESPEPGVGTKYKVLLFDLFHKLESTNHHFICCIRPNRNQVGGSFEEDLVLQQLRYFGILEVVRISRSGYPTRMTHQEFAGRYGFLLKETSVSQDSLSISIAVLQQFNVHPEMYRVGYIKLFFRTGQIRALDERKKQVMQGILGIQKYFRGCHARGNFHDLKQGATTLQSFIRGENARRRCTVKRFSFVVYAFSVPKKVYEVQAVIRLQSVIRGSLARKHLSMLDSKKFIENKKSKLNKGRRVSEEKFQERAQSLPTSLTELQKRVVEAEATIEKKEGENAALREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENAAPPGRVDAGNSPPHYYDSEDMTSMGSRTPGGTTPTKASGISEGGTGREMNGTVVAVNNLVKEFEQRKTAFDDDAKALIEAKSGSDANPDEEYRKIKARFEAWKKEYKARLRETKAKVHHKHGHFEVDRLRRKWWGKFSSKAS* 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36200613 36211471 - CsaV3_3G044360.1 Csa03g04130 525035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04130 1202 SMART iq_5 889 911 IPR000048 GO:0005515
Csa03g04130 1202 SMART iq_5 929 951 IPR000048 GO:0005515
Csa03g04130 1202 SMART iq_5 866 888 IPR000048 GO:0005515
Csa03g04130 1202 Gene3D - 799 866 - -
Csa03g04130 1202 Pfam Myosin head (motor domain) 196 853 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 917 IPR027417 -
Csa03g04130 1202 PANTHER MYOSIN-2 ISOFORM X1 122 1200 - -
Csa03g04130 1202 PRINTS Myosin heavy chain signature 224 243 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 PRINTS Myosin heavy chain signature 278 303 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 PRINTS Myosin heavy chain signature 320 347 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 Coils Coil 988 1036 - -
Csa03g04130 1202 Gene3D - 564 755 - -
Csa03g04130 1202 MobiDBLite consensus disorder prediction 23 51 - -
Csa03g04130 1202 ProSiteProfiles IQ motif profile. 930 957 IPR000048 GO:0005515
Csa03g04130 1202 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 141 190 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 SMART MYSc_2a 188 866 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 Gene3D Myosin VI head, motor domain, U50 subdomain 433 541 - -
Csa03g04130 1202 Gene3D - 376 432 - -
Csa03g04130 1202 Gene3D - 871 916 - -
Csa03g04130 1202 Gene3D Kinesin motor domain 193 798 IPR036961 -
Csa03g04130 1202 MobiDBLite consensus disorder prediction 1081 1100 - -
Csa03g04130 1202 PANTHER MYOSIN 122 1200 - -
Csa03g04130 1202 MobiDBLite consensus disorder prediction 1060 1108 - -
Csa03g04130 1202 CDD MYSc_Myo8 208 853 IPR036022 -
Csa03g04130 1202 ProSiteProfiles Myosin motor domain profile. 194 865 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g04130 1202 ProSiteProfiles IQ motif profile. 868 896 IPR000048 GO:0005515
Csa03g04130 1202 Pfam IQ calmodulin-binding motif 932 950 IPR000048 GO:0005515
Csa03g04130 1202 Pfam IQ calmodulin-binding motif 893 910 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04130 Csa-Chr3:36200613 Csa05g02081 Csa-Chr5:24121425 0 dispersed
Csa03g04130 Csa-Chr3:36200613 Csa03g01150 Csa-Chr3:9010824 1.20E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04130 K10357 - csv:101210624 2364.73