Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04139 ATGGGGGGTCCTTTACTCACTTCGCAAAATGATACGCTTGGAAGGTCTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTGAATGTCTCTGCCAGCCCAGGGAGCATAAAATATCATGCCGGTGTGACACCAGAAACTGCACCAAATTGGGTTTATGCAACTGCAGATGCCATGGGAGACCCAAATGTACCAAACGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAGTTTTCAATACTTTGTCAGAGTGCACTTTTGTGATATTATGAGCAAGGCTCTCAATAATCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCGTTAACCGGTGACTTGGGCGTGCCTTATTACAAAGACTTCATTTCCAACTCAGCAGATTCATCTACTTTGACTGTTAGTGTTGGCCCAGATACAATGGCAGACATCACCAATGCAACCATGAATGGGTTGGAGATCATGAAGATAAGCAACCAAGCTGGGAGCTTGGATGGAACCTCATCTGTTGCAAGCCTGTTCCCAGATGCGCCTTCAAAGAAGAACAACATAGCAATCATTGTTGGTTCTGTCTTGGGAGCTGTAGTAGGCCTTGCTTTGATCGTCTTCTGTTATTGCTGTTTCGTAGGACGCAAGTCGAAGACTACTCAACCAGCACACCCTTGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATTACAAAAGTTTCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTTATTTCTTTGGCTTCTTCCAGTCTCGGCAGATTCTTCACGTTTCAGGAAATTCTTGATGCTACCAACAAATTTGATGAAAATCTTCTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAACCCAAGATCAGAACAAGGTCTTGCCGAATTTCGAACTGAAATAGAAATGTTATCAAAGCTAAGACATCGTCATCTAGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTCTATGAGTATATGGCAAATGGACCTCTCAGGAGTCACTTATATGGAACAGATCTGCCACCGTTGTCATGGAAGCAACGACTTGATATTTGCATTGGTGCTGCAAGGGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGAGATGTTAAAACCACAAACATTCTATTGGATGAGAATTTCGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACCGGGCCATCTCTGGATCAGACTCATGTAAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTTGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGAGTCGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCACTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATCATGGACCCAAATCTGGTAGGTAAAGTTAATCCAGCGTCACTTAAGAAGTTTGGTGAAACAGCTGAGAAGTGTCTGGCCGAGTATGGGGTTGACAGGCCATCCATGGGAGACGTCCTGTGGAACCTGGAATATGCTCTTCAACTCGAGGAAACTTCATCTGCTCTGATGGAACCTGAAGACAACAGCACAAATCACATCCCTACCATCCAACTGACCCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGACGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCACAGCTCGTAAATCCTCGTGGGAGATGA 1884 44.11 MGGPLLTSQNDTLGRSWENDMKYLHVNSSAVNVSASPGSIKYHAGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPSFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSSTLTVSVGPDTMADITNATMNGLEIMKISNQAGSLDGTSSVASLFPDAPSKKNNIAIIVGSVLGAVVGLALIVFCYCCFVGRKSKTTQPAHPWLPLPLYGNSQTITKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36282254 36287603 - CsaV3_3G044450.1 Csa03g04139 525044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04139 627 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 1 620 - -
Csa03g04139 627 Gene3D Transferase(Phosphotransferase) domain 1 362 580 - -
Csa03g04139 627 SUPERFAMILY Protein kinase-like (PK-like) 263 557 IPR011009 -
Csa03g04139 627 Gene3D - 1 172 - -
Csa03g04139 627 ProSiteProfiles Protein kinase domain profile. 286 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04139 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Csa03g04139 627 Pfam Malectin-like domain 6 170 IPR024788 -
Csa03g04139 627 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Csa03g04139 627 SMART serkin_6 286 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04139 627 MobiDBLite consensus disorder prediction 591 612 - -
Csa03g04139 627 PANTHER OS07G0166700 PROTEIN 1 620 IPR045272 GO:0004714|GO:0006468
Csa03g04139 627 CDD STKc_IRAK 292 557 - -
Csa03g04139 627 Gene3D Phosphorylase Kinase; domain 1 244 361 - -
Csa03g04139 627 Pfam Protein tyrosine and serine/threonine kinase 291 485 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04139 Csa-Chr3:36282254 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa06g03364 Csa-Chr6:28018321 Csa03g04139 Csa-Chr3:36282254 9.58E-64 dispersed
Csa03g04139 Csa-Chr3:36282254 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78084 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04139 - - csv:101215627 1226.46