Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04153 ATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTCGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATTTGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTCGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTTGATGAGATGCCAGAGAGAAGTGTAGTCTCATGGAATGCAATGCAATCAGCTTATGCTCAAAAGGAATGTCCAAAAGAGGCTTTGAATTTGTTCCATCAAATGCTGGAAGAAGGGATCACTCCTGATGATACAACATGGGTTGTTACAATTTCATCATGCTCTTCCATCGGTGATCCTACCCTTGCTGATTCAATTCTAAGAATGATCGACCAAAAGCATATCGTTTTGAATAGTTTTGTCAAGACAGCTTTACTTGACATGCATGCAAAATTTGGTAACCTTGAGATTGCTAGAAATATCTTTGACGAATTGGGAAGTCAGAGGAATGCTGTTACTTGGAATATCATGATCTCAGCTTATACGAGGGTGGGAAAACTGTCATTAGCTCGAGAGTTGTTTGATAATATGCCAAAAAGAGATGTTGTTTCATGGAATTCGATGATAGCTGGCTATGCACAAAATGGAGAGTCAGCCATGTCAATTGAGCTCTTTAAAGAAATGATTTCTTGTATGGATATACAGCCAGATGAGGTTACCATAGCTAGTGTTTTGTCTGCTTGTGGTCATATTGGAGCTCTAAAGTTGAGTTACTGGGTTCTAGATATTGTTCGAGAGAAAAACATTAAATCTGAGTATGATACACTAGGAACATCAGTCAAAGCTGCACTTGTTTATCTTGGAACTGCCTTAGTAAAGCTTGTATGCCTTGCAACTTTTCTTAACGTGTCAGAGAATGACTCCTTTGACCCATATCAGGAACTGTTGAAAGCGCTCATCGGTTTTATTGATGTCGCTGGAATTTACTTTGCTTTGACCCAGTTGACTTACCGAAATATATCCCAGAACCATAAATTTCAGGCAGTTGGACTGGGTTGGGCGTTCGCCGATTCTGTCTTGCATAGATTGGCACCACTTTGGGTAGGGGCCAGAGGACTGGAGTTTACTTGGGATTACATTTTGCAGGGCCTTGAAGCTAATGCAAATCTGGTGTTGAGCATATCTCTTGCTGCATTGGGATCTTTGATGTGGCTGAGGAAGAACAAGCCCAAAACTCTAATTCCCATAATATATGTCTGTGCACTGATCGTAGCTACCATGCCATCCATCACAAGCTACTTAAGGCGAGGAATGGGTTGGCATTTTCCAAAGGTGGTGGGATTTGAGCTCTTCACCTCTCTGGTGATGGCTTTTATTAGTTGGCAGCTTTTCTCTGCTTGCCAGAGGCCCTCTGTCTAA 1881 42.21 MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKSEYDTLGTSVKAALVYLGTALVKLVCLATFLNVSENDSFDPYQELLKALIGFIDVAGIYFALTQLTYRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYVCALIVATMPSITSYLRRGMGWHFPKVVGFELFTSLVMAFISWQLFSACQRPSV* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36483192 36487915 - CsaV3_3G044590.1 Csa03g04153 525058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04153 626 PANTHER SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 424 625 IPR019164 -
Csa03g04153 626 Pfam PPR repeat family 354 402 IPR002885 -
Csa03g04153 626 Pfam PPR repeat family 222 268 IPR002885 -
Csa03g04153 626 Pfam Predicted membrane protein (DUF2053) 408 559 IPR019164 -
Csa03g04153 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Csa03g04153 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Csa03g04153 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Csa03g04153 626 Pfam PPR repeat 164 192 IPR002885 -
Csa03g04153 626 Pfam PPR repeat 134 159 IPR002885 -
Csa03g04153 626 Gene3D Tetratricopeptide repeat domain 275 412 IPR011990 GO:0005515
Csa03g04153 626 Gene3D Tetratricopeptide repeat domain 10 120 IPR011990 GO:0005515
Csa03g04153 626 Gene3D Tetratricopeptide repeat domain 188 274 IPR011990 GO:0005515
Csa03g04153 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 256 IPR002885 -
Csa03g04153 626 PANTHER BNAA08G03740D PROTEIN 424 625 - -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 357 392 IPR002885 -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 164 192 IPR002885 -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 326 357 IPR002885 -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 134 158 IPR002885 -
Csa03g04153 626 TIGRFAM PPR: pentatricopeptide repeat domain 193 224 IPR002885 -
Csa03g04153 626 Gene3D Tetratricopeptide repeat domain 121 187 IPR011990 GO:0005515
Csa03g04153 626 Pfam PPR repeat 320 351 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04153 - - - csv:101214420 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04153 Csa-Chr3:36483192 Csa06g02705 Csa-Chr6:23711124 6.26E-60 dispersed
Csa03g04153 Csa-Chr3:36483192 Csa03g01303 Csa-Chr3:9965135 1.00E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g840 . . . . . . . . . . . Cma09g00195 Car01g01463 . . Cpe06g00133 . . . . . . . . . . . . . . . . . Cone17ag1308 Cone20ag0164 Lsi04g01606 Csa03g04153 Chy04g00567 . . . Bda08g01317 . . Bpe05g00070 . . . . Cmo09g00191 . . . Car09g00165 . . Bhi09g02027 . . . . Mch11g0242 . Cla05g01993 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003631 2 2 2 3 1 1 2 1 2 1 2 0 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 2 1 2 44