Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04154 ATGAACACACCATCTTCCTTCCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCAACACTGCCATGTGAGGCCAAGGCCACGAAGCCAAGAAGCTCAACCACCATGGATTCGAGTTCCAGTGGCAAAAGTGATTTGAGCCATGAAAGTGGTCTCTTCCACCACCTAGGGTTTGAAGCGGGAGATTTGGAGGTTCCTCCTCGGCGTCCTCACCAAGCAGCTTGTTGTAATGTGCGTGACCACCGCGATTTCAAAAGAAGCGGAGGCAGGGTCGGGTGTGGAGTAAGAAGAAACATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGACCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGAAACAGCAGATGATTGTGGAAGGCCTGAGGTTGAAGAAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAACAGTTGCCACAGAACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATTAAGGTTGAAGGAAGCAATGGGGATTATCAGGAGGCAATTACAATGGAGAGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTTTGGTGATTCAAAGGAGCTTGCCCTTCTCAATTGCTAA 810 45.31 MNTPSSFPDLSLQISLPMSTLPCEAKATKPRSSTTMDSSSSGKSDLSHESGLFHHLGFEAGDLEVPPRRPHQAACCNVRDHRDFKRSGGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEEDGMVLSSCVKKSNFGSNHFQRIQRSSLVTSMHNSCHRTKSNADAFAKSRGIKVEGSNGDYQEAITMERINLEFTLGRPSWQLDFGDSKELALLNC* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36504113 36508043 + CsaV3_3G044600.1 Csa03g04154 525059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04154 269 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 260 - -
Csa03g04154 269 MobiDBLite consensus disorder prediction 26 47 - -
Csa03g04154 269 Gene3D - 101 158 - -
Csa03g04154 269 Pfam Myb-like DNA-binding domain 103 154 IPR001005 -
Csa03g04154 269 SUPERFAMILY Homeodomain-like 99 156 IPR009057 -
Csa03g04154 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 155 IPR006447 GO:0003677
Csa03g04154 269 MobiDBLite consensus disorder prediction 24 47 - -
Csa03g04154 269 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 260 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02010 Csa03g04154 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04154 Csa-Chr3:36504113 Csa03g04582 Csa-Chr3:39874462 8.29E-34 dispersed
Csa04g02176 Csa-Chr4:22570288 Csa03g04154 Csa-Chr3:36504113 1.97E-20 transposed
Csa06g01335 Csa-Chr6:11169853 Csa03g04154 Csa-Chr3:36504113 3.45E-23 transposed
Csa06g03708 Csa-Chr6:29652115 Csa03g04154 Csa-Chr3:36504113 1.23E-20 transposed
Csa02g02010 Csa-Chr2:18650102 Csa03g04154 Csa-Chr3:36504113 5.06E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31411 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04154 - - csv:101214179 530.02