Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04155 ATGTCCTCCGAAGACATCAATGGCCTCGACTCCCACCTCGTCTTCCAGAATGAATCCCTCCCTTTCAATTGTTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTATTGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTCCGACGGAATGTTTTTGGTCACAACCGGAATTGGAATGGTTCTGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGACGACGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTGACAGTAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCATTTTTCAAGGATGCTTTTGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCCCAGGGAAGGTTGGGGAACTATCCAAATGCTGTTACAGTTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAGAATTTGAGTATGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTCTCAGGAGAGCCTGGAGAGTCTTTGAGATCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAAAGTAAGATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTGTTTCACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCAAAGGTTCCAAATGATGCAACAACAAAGACGATAACAAGGAAGATCACGCCAAATTGGCTTTAG 1275 46.35 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPIVDRDRFFSQQGEDFRRNVFGHNRNWNGSARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDSNNDRSDQSSEGLKNGINKLGNGKLKQHSSFFKDAFVGSSGATQSENNPQGRLGNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKNLSMENGCGFGRRDVSFSGEPGESLRSILTDPVTGALMNDAMILPCGHSFGSGGIQHVLKVRSCYSCSQSVSEDSIAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKTITRKITPNWL* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36514717 36519785 - CsaV3_3G044610.1 Csa03g04155 525060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04155 424 ProSiteProfiles U-box domain profile. 242 314 IPR003613 GO:0004842|GO:0016567
Csa03g04155 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 313 IPR013083 -
Csa03g04155 424 MobiDBLite consensus disorder prediction 171 190 - -
Csa03g04155 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 424 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 122 148 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 91 115 - -
Csa03g04155 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 424 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 19 40 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 171 187 - -
Csa03g04155 424 SUPERFAMILY RING/U-box 241 313 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 71 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04155 Csa-Chr3:36514717 Csa05g00898 Csa-Chr5:6968132 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04155 - - csv:101213937 796.578