Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04155 ATGTCCTCCGAAGACATCAATGGCCTCGACTCCCACCTCGTCTTCCAGAATGAATCCCTCCCTTTCAATTGTTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTATTGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTCCGACGGAATGTTTTTGGTCACAACCGGAATTGGAATGGTTCTGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGACGACGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTGACAGTAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCATTTTTCAAGGATGCTTTTGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCCCAGGGAAGGTTGGGGAACTATCCAAATGCTGTTACAGTTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAGAATTTGAGTATGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTCTCAGGAGAGCCTGGAGAGTCTTTGAGATCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAAAGTAAGATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTGTTTCACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCAAAGGTTCCAAATGATGCAACAACAAAGACGATAACAAGGAAGATCACGCCAAATTGGCTTTAG 1275 46.35 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPIVDRDRFFSQQGEDFRRNVFGHNRNWNGSARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDSNNDRSDQSSEGLKNGINKLGNGKLKQHSSFFKDAFVGSSGATQSENNPQGRLGNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKNLSMENGCGFGRRDVSFSGEPGESLRSILTDPVTGALMNDAMILPCGHSFGSGGIQHVLKVRSCYSCSQSVSEDSIAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKTITRKITPNWL* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36514717 36519785 - CsaV3_3G044610.1 Csa03g04155 525060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04155 424 ProSiteProfiles U-box domain profile. 242 314 IPR003613 GO:0004842|GO:0016567
Csa03g04155 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 313 IPR013083 -
Csa03g04155 424 MobiDBLite consensus disorder prediction 171 190 - -
Csa03g04155 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 424 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 122 148 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 91 115 - -
Csa03g04155 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 424 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 19 40 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 171 187 - -
Csa03g04155 424 SUPERFAMILY RING/U-box 241 313 - -
Csa03g04155 424 MobiDBLite consensus disorder prediction 71 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04155 - - - csv:101213937 796.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04155 Csa-Chr3:36514717 Csa05g00898 Csa-Chr5:6968132 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00037 . 9 728 Plant U-box Gene Family AT5G57035 52.7 9.7e-222 766.9
Csa03g04155 . 191 425 Plant U-box Gene Family AT5G05230 58.8 1.2e-70 263.8
Csa05g00898 . 192 426 Plant U-box Gene Family AT5G05230 59.6 2.7e-70 262.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40