Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04156 ATGCCACGGTCATTCATTCAAGGCCATCACTATGCGACGCTCTCTCTCTTCTCTTTTCATTTTTTCTCTACCAGTGGAGAAGGGGGTTACCATTCTGATCCTATAAACGTTGACTGCATTGCTTTATCACATTCATCCGTCTTAGTCAGATTATCGATCCACGAAATTGAAATGGAACATCCCGAAATACCATCCATTGGAGTCATTTCGTCATATCTCTACAGCTTTGGAGCTGGTTTCTTCCTTTTGGTTCTCTCGTTTCTTTTTGTTTTGAAGAAGGCTACTGCCCGTAAACGCAAAGAACCTCCTGAAGTAGCCGGCGGATGGCCGATAATCGGTCATCTACGACTTCTCAAAAGTGATTCACAACTCCCTCATCAAACCTTAGGAGCCTTGGCTGATAAATATGGACCAATATTCCGCATCCGAGTCGGTGCTCAACCAACTCTTATTATTAGCAGTTCAGAGTTAGCTAAAGAGTGTCACACAACCCTTGATTCAATTGTCTCCTCTCACCCCAAAAGTGTGGCAGGAAAGCTGTTAGGCTATAACTATGCGGCATTTGGGACCAGGCCTTATGATTCTTTTTATCGTCGTATGCGTAAAATTGTAGCTTCCGAGGTGCTTTCGAACCGCCGTCTAGAGTTACAAAGAGATGTTAGAGTTTCTGAGGTGAAGAAGGCTTTGAAGGAGGTTTTCAACCAATGGACAAAGAGAGAGGAAGGGTCAAATCATATATTGGTTGATGTGGAAGAGTTGATTGGGAATATTAACTTGAAAGTGGTTCTGATGATGGTTTCTGGTAAACGGTTCCTTGGTGGTTCTGGTGAGGTTGAGGAGATGAAACGATATCGTAAAGTGATGAGAGATTTCTTGGATTTGTTGGGGAAGTTTGTGGTGGGAGATTCCATCCCTTTTCTGAGATGGTTGGATGTTGGTGGATATGAGAAGGCCATGAAGATAACTTCAAAAGAATTGGACTCTCTTTTGGAGGAATGGCTTGAAGATCATCGTCGGAAGAGAAACTCAGGTGCCATCGATGGTGAACATGGCGACTTGATGGATGTATTGCTTTCCAATCTTGAAGGGATGGATCTTGGGGGCTACGACGCCAATACAGTCAATAAAGCCACTTGTACGAGCATAATAACTGGGGGAACTGACACTGTAACAATAAGTCTGGCATGGGCCGTCTCCTTATTGCTTAATAATAGGGAGGTACTAAGAAGGGCACAAGAGGAGCTAGACATTCATGTAGGAAACAAAAGGCTAGTGGACGAATTAGACATAAGCAAGTTGGTGTATCTCCAAGCTGTAGTGAATGAGACATTGCGGTTGTACCCTCCTGGACCTTTGTCGGGTGTTCGGGTGTTCAGTGAGGATTGCATAGTCGGAGGCTACAACATCGCAGGCGGCACGCACCTCATTACAAACCTCTGGAAGATACATACAAACCCCGAGGTTTGGGCTGAACCTTTGGAGTTCAAGCCTGAGAGGTTTCTCAACAGAAACAAGCAGCTGGATGTGAAGGGTCAAAGATTTGAATTTCTCCCGTTTGGTTGTGGAAGAAGATCTTGCCCTGGAATGAACCTTGGGATTCAAATGACACAGTTGATGCTGGCAAGTCTGATTCATTCGTTCGAACTTAACACTCGTTCTGATGAACCAGTGGACATGGCTGCTAGCTTTGGAATTGCAATGTACAGAACCAACCCTCTTGAAGTTCTCGTCAAACCACGCCTTCTTGCTAGTGCTTATGTATGA 1764 44.56 MPRSFIQGHHYATLSLFSFHFFSTSGEGGYHSDPINVDCIALSHSSVLVRLSIHEIEMEHPEIPSIGVISSYLYSFGAGFFLLVLSFLFVLKKATARKRKEPPEVAGGWPIIGHLRLLKSDSQLPHQTLGALADKYGPIFRIRVGAQPTLIISSSELAKECHTTLDSIVSSHPKSVAGKLLGYNYAAFGTRPYDSFYRRMRKIVASEVLSNRRLELQRDVRVSEVKKALKEVFNQWTKREEGSNHILVDVEELIGNINLKVVLMMVSGKRFLGGSGEVEEMKRYRKVMRDFLDLLGKFVVGDSIPFLRWLDVGGYEKAMKITSKELDSLLEEWLEDHRRKRNSGAIDGEHGDLMDVLLSNLEGMDLGGYDANTVNKATCTSIITGGTDTVTISLAWAVSLLLNNREVLRRAQEELDIHVGNKRLVDELDISKLVYLQAVVNETLRLYPPGPLSGVRVFSEDCIVGGYNIAGGTHLITNLWKIHTNPEVWAEPLEFKPERFLNRNKQLDVKGQRFEFLPFGCGRRSCPGMNLGIQMTQLMLASLIHSFELNTRSDEPVDMAASFGIAMYRTNPLEVLVKPRLLASAYV* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36522142 36525158 + CsaV3_3G044620.1 Csa03g04156 525061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04156 587 Gene3D Cytochrome P450 87 581 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS P450 superfamily signature 385 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS P450 superfamily signature 517 526 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PANTHER CYTOCHROME P450 FAMILY PROTEIN 81 586 - -
Csa03g04156 587 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 519 528 IPR017972 GO:0005506|GO:0016705
Csa03g04156 587 PANTHER CYTOCHROME P450 82C3-RELATED 81 586 - -
Csa03g04156 587 SUPERFAMILY Cytochrome P450 107 580 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 133 152 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 374 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 394 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 437 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 478 502 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 516 526 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 PRINTS E-class P450 group I signature 526 549 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04156 587 Pfam Cytochrome P450 106 562 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04156 - - - csv:101208814 1128.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04156 Csa-Chr3:36522142 Csa03g04163 Csa-Chr3:36571830 1.56E-156 dispersed
Csa03g04156 Csa-Chr3:36522142 Csa03g04158 Csa-Chr3:36528989 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442