Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04158 ATGGCAGATCACATAATTTCTCCATATGGTATCAACATCTCCATAGTTGGATTACTCTTCCTCTTCCCTATTCTCATCTTCTCATATTATATTATTCTAATTCTCAAGAACAAAGCTACAACATTACCTCATAAACTCCGATCGCAACCCCCTGAAGTAGCGGGCGGATGGCCGATCATTGGCCATCTACTCCTCCTCAGAACTCACTCTATGCTCCCCCACGAAACCTTTGGAGCATTGGCCGACAAATATGGCCCGATATTCCTAATCCGACTCGGCGTCCATCCAACTCTGGTCATAAACAATTGGGAAATCGCCAAAGAATGCTACACAACTCTTGATTCAATCGTCTCATCCCGACCCAAGACTTCAATTCAAAAGGAATTAAGCTACAACTTCGCCGGGTTTGGGTTCAGGCCAAAGTACGATGCTTTTTACCGAAACATGCGTAAAATGGCAGTCTCCGAAGTGCTTTCGAATAGCCGTCTGGAAATACAGAGAGATATGAGAGTTTATGAGGTGAACAGAGGAGTGAAGGAGATATACAACTCATGGACAGAGTACAGAAATGAGGATTTAATTGCTGTCGATTTGGATGAATGGATTGGGAATATTAATTTGAATGTGATTTTGAGGATGGTTTGTGGGAAGCGGATGGCTGAGGGGTCGGAGATGGAACGATGTCGGAAAGCGATGAGGGGGTTTTTTGAATTGGCAGGTCAGGTAACGGTGGGAGATGCGATTCCATTTCTAAAATTTTTGGATTTGGGTGGTTATTTGAAGACGACTAAGGAAGTTTTTAAGGAATTGGATTGTATCATGGAGGAATGGCTTGAAGAACATCGTCAGAAGAAGAGAGACGCCGGCGCCAGTGCTGGTGCCGCGGAGAAGGGTCTCATGGGTGTGATGCCTTTGCTTCTCAAAGGGATGGAGCTTGATGGGTATGATGCTGATACTGTCGTTAAAGCCACTTGCCTGACACTTATTTCTGGAGGAACCGATACAATGACAGTAACTATAACATGGGCAATCTCATTGTTACTTAACAACCAAGATGCATTAAGAAGAGTACAAGAGGAGTTAGACATCCATGTTGGAAACAAAAGACTAGTGAATGAATCAGACATAAACAAGCTAGTGTATCTTCAAGCTGTAATCAAAGAGACATTAAGGTTGTACCCAGCAGGGCCATTGTCTGGGGCTCGAGAGGTAACCGAGGATTGCACAATTGGAGGCTACAATGTGGCGTCAGGCACACACCTTATCACAAACATTTGGAAGATTCAGAGGGACCCTCGAGTTTGGACAGAGCCTTCAAAGTTCAAACCGGAGAGGTTTCTTAGTAGCCATAACTATGACTACATGGATGTGAAGGGCCAACATTTTGAATTGTCTCCATTTGGTTATGGAAGAAGGGTCTGCCCTGGGTTAGGTATTAGCCTTATGATGACGCCATTGGTGTTGGCTAGTTTGATTCATTCGTTTGATGTTACAACTTATGATGATGAACCAGTGGACATGGCTGCAAACCTTGGGCTCACCATGCGCAGAGTCAAACCTCTTCATGTTCTCGTTAAGCCGCGTCTCCTAGCTACTGCTTATGCATAA 1608 44.34 MADHIISPYGINISIVGLLFLFPILIFSYYIILILKNKATTLPHKLRSQPPEVAGGWPIIGHLLLLRTHSMLPHETFGALADKYGPIFLIRLGVHPTLVINNWEIAKECYTTLDSIVSSRPKTSIQKELSYNFAGFGFRPKYDAFYRNMRKMAVSEVLSNSRLEIQRDMRVYEVNRGVKEIYNSWTEYRNEDLIAVDLDEWIGNINLNVILRMVCGKRMAEGSEMERCRKAMRGFFELAGQVTVGDAIPFLKFLDLGGYLKTTKEVFKELDCIMEEWLEEHRQKKRDAGASAGAAEKGLMGVMPLLLKGMELDGYDADTVVKATCLTLISGGTDTMTVTITWAISLLLNNQDALRRVQEELDIHVGNKRLVNESDINKLVYLQAVIKETLRLYPAGPLSGAREVTEDCTIGGYNVASGTHLITNIWKIQRDPRVWTEPSKFKPERFLSSHNYDYMDVKGQHFELSPFGYGRRVCPGLGISLMMTPLVLASLIHSFDVTTYDDEPVDMAANLGLTMRRVKPLHVLVKPRLLATAYA* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36528989 36531664 + CsaV3_3G044640.1 Csa03g04158 525063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04158 535 PANTHER CYTOCHROME P450 FAMILY PROTEIN 22 534 - -
Csa03g04158 535 PANTHER CYTOCHROME P450 82C3-RELATED 22 534 - -
Csa03g04158 535 SUPERFAMILY Cytochrome P450 55 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 81 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 105 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Csa03g04158 535 Gene3D Cytochrome P450 43 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04158 535 Pfam Cytochrome P450 54 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04158 - - - csv:101213692 1060.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04158 Csa-Chr3:36528989 Csa03g04163 Csa-Chr3:36571830 3.18E-150 dispersed
Csa03g04156 Csa-Chr3:36522142 Csa03g04158 Csa-Chr3:36528989 0 proximal
Csa03g04158 Csa-Chr3:36528989 Csa03g04159 Csa-Chr3:36543792 6.04E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g845 . Blo12g00930 . . . . . . . . Cma01g01880 Cma09g00191 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04158 Chy04g00559 . . . . . . . . . . . Cmo09g00186 . . . . . . Bhi09g02031 . . . . . . Cla05g01987 . . . . . . . . . Cme04g00668
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442