Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04160 ATGATGGACTTCCCATCACCCATCATTATTTTTCTCTTCATTTTTTCTTCTTATTATTTGTGGAGAAAGTGGCAGAAAAATAAGAAAACTAAGGGAGTTAGTGAGGGAAAGAAGGCCCCTTCGCCGGGGGGAGCGTTACCGATAATTGGCCACCTCCATCTGCTGAACAAGCGCGGGAAGCTTCCACACCATGTTCTTGGATCCATGGCTGATAAATATGGCCCCATCTTTAGGTTGAACCTCGGCTCGCGCCCGGCTTTGGTTGTTAGTAATTGGGAAATGGCTAAAGAAAGTATGTGTACTAATGACGCGGCCGCCGCCTCTCGCCCGGAGCTCTCAGTGTCTAAGAATTTCTCTTATAATTTCGCCATGTTTGGGTTGGCTTCTTACAGTTCTTACTGGCGTGATATGCGTAAAATTACCCACTTGGAGCTCCTCTCTAATCCACGAGTCGATCAGGTTAAGAGCGTGATGTTAGGTGAGATGAGCACATCATTGAGAGAGTTATACACAAGATGGGGTGGAGAAAGGAAGAAATTGGAGGAAATTTCAGTTGAAATTAAACATTGGTTTGGGGATGCAACACTGAATATGCTTCTCAAAATCATCATGGGGAAAAGATGTGTGGGTCCAAATGCTTCCGAGGGAAATGAAAATGATGCAAGAACATTGCAAATGGGAATTAGGGAGTCTTTCCATTTGATGGGTGAAGGGTTATTGAGAGACTATATTCCTTGGGTTGCAAACCTTGGATTTGATGGCCGAGTTAAGGCTATGGAGAAAATAGCAGAACAAATGGATGCCATTCTTCAGCGTTGGTTTGAAGAACACATGCACCATAGATCCACTGATGATTTGGATAGAAGAGATGGCGATTTTATGGATTCATTGATTTCGTTAGGTCGAGCTAATCAACTTCCAACTCACCATAATCAAAATACAATTGTCAAAGCCACAACTTTGAACATGATTGCTGGAGGAACTGAAAGCAGCACAGTGACTCTAACATGGGCCATATCTTTATTACTAAAGAACCCATGTGCCTTAGAAAAGGCTTATCAAGAGCTTGACCAAGTTGTAGGAAGAGACAGGAAGCTGAACGAGTCAGACATAAACAATCTTGTTTATTTACAAGCCATTGTGAAAGAAACACTGAGATTGTACCCAGCAGGGCCTTTACTGGGCCCTCGTGAATTCTACAAGGACTGTTTTGTGGCTGGCTATTTTGTCTCCAAGGGCACTCAATTGATCCCCAACATTTGGAAGATCCAAACTGACCCTCGGGTTTGGCCCGACCCTTTCGAGTTCAAGCCCGAGCGATTTTTGACAACACATAAGGACGTGGATTTGAAAGGGAATAATTTTGAGTTGATTCCGTTTGGGAGTGGAAGGAGAGGGTGTCCTGGAGTTTCATTTGGACTTCAAATGGTGCATTTTGCTTTGGCTGGGTTCTTGCATTCTTTCCACATTAAAAATCCATTGGGCGAAGAAATTGATATGAGGGAGGATTTTGGGATGGCCAATGAGAAAGTGGTTCCTCTTAATGTTTTGGTTACCCCTCGGTTACCTTTGCATCTCCACACCCCAATAACAGTGTAG 1599 43.59 MMDFPSPIIIFLFIFSSYYLWRKWQKNKKTKGVSEGKKAPSPGGALPIIGHLHLLNKRGKLPHHVLGSMADKYGPIFRLNLGSRPALVVSNWEMAKESMCTNDAAAASRPELSVSKNFSYNFAMFGLASYSSYWRDMRKITHLELLSNPRVDQVKSVMLGEMSTSLRELYTRWGGERKKLEEISVEIKHWFGDATLNMLLKIIMGKRCVGPNASEGNENDARTLQMGIRESFHLMGEGLLRDYIPWVANLGFDGRVKAMEKIAEQMDAILQRWFEEHMHHRSTDDLDRRDGDFMDSLISLGRANQLPTHHNQNTIVKATTLNMIAGGTESSTVTLTWAISLLLKNPCALEKAYQELDQVVGRDRKLNESDINNLVYLQAIVKETLRLYPAGPLLGPREFYKDCFVAGYFVSKGTQLIPNIWKIQTDPRVWPDPFEFKPERFLTTHKDVDLKGNNFELIPFGSGRRGCPGVSFGLQMVHFALAGFLHSFHIKNPLGEEIDMREDFGMANEKVVPLNVLVTPRLPLHLHTPITV* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36551779 36555644 + CsaV3_3G044660.1 Csa03g04160 525065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04160 532 PANTHER CYTOCHROME P450 82C3-RELATED 37 526 - -
Csa03g04160 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Csa03g04160 532 SUPERFAMILY Cytochrome P450 40 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PANTHER CYTOCHROME P450 37 526 - -
Csa03g04160 532 Pfam Cytochrome P450 40 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 Gene3D Cytochrome P450 29 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04160 532 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04160 - - K23136 csv:101213214 1073.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04160 Csa-Chr3:36551779 Csa03g04165 Csa-Chr3:36583366 4.71E-154 dispersed
Csa03g04168 Csa-Chr3:36599823 Csa03g04160 Csa-Chr3:36551779 2.92E-140 dispersed
Csa03g04159 Csa-Chr3:36543792 Csa03g04160 Csa-Chr3:36551779 0 tandem
Csa03g04160 Csa-Chr3:36551779 Csa03g04161 Csa-Chr3:36557638 8.15E-146 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g849 . . . . . . . . . . Cma01g01881 Cma09g00189 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04160 . . . . . . . . . . . Cmo01g01940 Cmo09g00184 . . . . . . Bhi09g02034 . . . . . . Cla05g01984 . . . . . . . . . Cme04g00665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442