Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04163 ATGATTGTCATACGCAATATGGAACTCCTTCACTTTTCTTCCCCGGACGTGGTTGCTAGAATCTTCGCCCTCATCATCTTTCTCTATGCTCTATTCAAGATATATAGAGGAAGAGCCAGAGCTCATCATCGGAAGCGACTGCCACCGGAAGTCGGTGGCGCATTGCCGCTGATTGGCCATCTTCATCTTTTAGATAAAAATGAACCAGCTCACATAACGTTTGCCAAAATGGCTGATGCATATGGGCCAATATTTACGTTGAGATTGGGTTTGTACACAAACTTGATTGTGAGCAATTGGGAAATAGCGAGAGAGTGTTTTACTACAAACGATAAAATCTTTGCCTCTCGTCCAAAGCTCGTGGCCTCAAAGTTGTTGGGGTATGACTATGCCATGTTGGGGTTGAGCCCATATGGTCCACACTGGCGCCATGTTCGCAAGTTAACCATGCTTGAACTATTGACGAGCCATCGCCTCCAGAAGCTCCAACACATAAGGGTATCCGAGGTCCAAACTTCGATTAAGAATTTATATGAGTTATGTCTAAAAAACAAGAAGAATAATGAGAAGAATGCATTGGTGGAGATGAAGACATGGTTTGGAGATATAACTCTAAACACCATTTCTAGGATAGTGGTTGGAAAGCAATTCTCAACGGCCGTGGATGTGAGTAATACTAATGAAAATGAAGAGTATCGGAAGGCGTTGAGGGATTTTTTCGAATGGTTTGGAGTATTTGTTCCTTCAGATTCGTTTCCATTTCTAAAGTGGTTGGATTTGGGTGGACATGAGAAAGCCATGAAGAAGACTGCCCAAGTTCTCGATGAGGTGTTTGATAAATGGATTCAAGAGCATCAACAAAAGAAAAATAATTTGGGTGCAGTGAAGATGGAAGAACATGACTTCATGGATGTGATGCTTTCTAATGTTAGAGATGACGGACAACTTTCTAAATATGATGCTCATATTGTCACCAAAGCTACATGTTTGGCTCTTATATTGGCTGGATCTGACACTACAACAGTAACAATGATATGGGCTCTTTCTTTACTTCTTAATAATCAAGAAGTACTTAAGAGAGCTCAACTTGAATTGGACGAACATGTTGGGAGACAAAGACAAGTGAAAGAATCCGATGTAAAGAACTTACTGTATCTTCAAGCTGTTGTGAAAGAAACATTACGTTTATATCCTGCAGCGCCAATTCTAATCCCTCATGAATCAATTGAGGATTGTGTGGTTGCTGGTTACCATATTCCGTTAGGAACACGATTGATAGTGAATGTTCAAAAGCTTCAAAGAGACCCACAAATATGGGAGGATCCTTGTGAGTTTCATCCAGAAAGATTTTTAACAAGTGAAAAAGATTTTGATGTTAGAGGACAGAGTCCCCAGTTAATACCATTTGGAAGTGGTCGAAGAATGTGCCCTGGAATCTCGTTTGCTCTACAAGTGATGCATTTAGCACTTGCCAATTTGCTTCATGGGTTTGAAATTAGTAGGCCAACTAAAGAGCTTCTGGACATGGAGGAGAGTGCTGGAATGACAAGTATTAGAAAGAATCCACTTGAAGTTGTTTTAACGCCACGCCTTCCACCTCAAGTTTATGAATTATAA 1617 40.63 MIVIRNMELLHFSSPDVVARIFALIIFLYALFKIYRGRARAHHRKRLPPEVGGALPLIGHLHLLDKNEPAHITFAKMADAYGPIFTLRLGLYTNLIVSNWEIARECFTTNDKIFASRPKLVASKLLGYDYAMLGLSPYGPHWRHVRKLTMLELLTSHRLQKLQHIRVSEVQTSIKNLYELCLKNKKNNEKNALVEMKTWFGDITLNTISRIVVGKQFSTAVDVSNTNENEEYRKALRDFFEWFGVFVPSDSFPFLKWLDLGGHEKAMKKTAQVLDEVFDKWIQEHQQKKNNLGAVKMEEHDFMDVMLSNVRDDGQLSKYDAHIVTKATCLALILAGSDTTTVTMIWALSLLLNNQEVLKRAQLELDEHVGRQRQVKESDVKNLLYLQAVVKETLRLYPAAPILIPHESIEDCVVAGYHIPLGTRLIVNVQKLQRDPQIWEDPCEFHPERFLTSEKDFDVRGQSPQLIPFGSGRRMCPGISFALQVMHLALANLLHGFEISRPTKELLDMEESAGMTSIRKNPLEVVLTPRLPPQVYEL* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36571830 36574000 + CsaV3_3G044690.1 Csa03g04163 525068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04163 538 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 SUPERFAMILY Cytochrome P450 53 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 Pfam Cytochrome P450 49 520 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Csa03g04163 538 PANTHER CYTOCHROME P450 82C3-RELATED 45 537 - -
Csa03g04163 538 PRINTS E-class P450 group I signature 78 97 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 102 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04163 538 PANTHER CYTOCHROME P450 45 537 - -
Csa03g04163 538 Gene3D Cytochrome P450 33 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04156 Csa-Chr3:36522142 Csa03g04163 Csa-Chr3:36571830 1.56E-156 dispersed
Csa03g04158 Csa-Chr3:36528989 Csa03g04163 Csa-Chr3:36571830 3.18E-150 dispersed
Csa03g04163 Csa-Chr3:36571830 Csa03g04165 Csa-Chr3:36583366 0 dispersed
Csa03g04162 Csa-Chr3:36561588 Csa03g04163 Csa-Chr3:36571830 0 tandem
Csa03g04163 Csa-Chr3:36571830 Csa03g04164 Csa-Chr3:36576709 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04163 - - csv:101208335 1057.74