Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04164 ATGGATCTTTCTCAACTCTCTTTATCAGCCACCGTCGTTACCGGAATCTTCTCCCTTCTCCTCTTTCTCTATGCCCTCTTCGACATATCTACAAGAGTGGCCGGTGCTCGTCGAAACAAACTCCCACCCGAACTCCCTGGTCGTTGGCCAGTGATTGGTCACCTCCATTTGTTAAATGCAACAGAACCAGCGCACATAACCTTAGCAAAGTTCGCAGACACTTACGGACCAATATTTACTTTGAAATTGGGTATGAACAAAGCCTTGGTCGTGAGCAGTTGGGAAATAGCGAAAGAGTGTTTCACTACAAACGACAGAATCTTTGCCTCTCGTCCAAAGCTCGTGGCCTCCAAGTTGCTGGGATATAACTACACCATGTTTGGATTGAGCCCATATGGTTCGTACTGGCGTCATATCCGCAAACTCGCCACGCTTGAACTCTTGACCAACCGCCGCCTCCACCAGCTCCAACATATCAGAGAATTTGAAGTCCAAACTTCAATTAAGAAGCTGTATGAGTTATGTATCAGAAACAAGAAATCGTTGGTGGAAATGAATACGTGGTTTGGGGATATAACTCTAAACACAATCTTTAGGATGGTGGTTGGAAAGAGATTCTCAATGGCAATGGATGGAAGTGCTAATGGAAATGATGTATATCGTATGGCATTGAGGGATTTTTTTGAATGGTTTGGAGTGTTTGTGCCTTCAGATAGTTTTCCATTTCTAAAGTGGTTTGATTTGGGTGGACATGAGAAAGCCATGAAGAAGACAGCTAAAATTCTTGACGAGGTGTTTGATAAATGGCTTCAAGAACATCGACTAAGGAGAAAATTTGAGGAGAGTGAGAATGACTTCATGGATGTACTTCTTTCTAATGTTAAAGATGCAGAACAATTTTCAAACTACGATGCAGATACAGTTATCAAGTCTTCATGTTTGGCTCTTATATTGGCTGGTTTTGATACTACAACAGTAACAATGATTTGGACACTTTCTTTATTACTCAACAATCCAGAAGCACTCAAAAGAGCTCAACTTGAATTAGATGAGCAAATTGGGAGACACAAACAAGTTAAAGAATCAGATATAGAAAAGCTTAAGTATCTCGAAGCAATAGTGAAAGAAGCATTACGTTTATATCCACCAGGACCACTTGGAGTTCCTCATGAATCCACAGACGATTGTAAAATTGCAGGCTATCATATTCCAGCAGGAACACGTTTAATGGTGAATATTCAAAAGCTTCAAAGAGACCCATGTGTGTGGGAAGATCCCTGTGAATTTCGACCAGAAAGATTTCTAACAAGTCACAAAGATTTTGACGTTAGAGGAAAATGCCCCATGCTCATACCATTTGGAACTGGACGTAGGATGTGTCCAGCAAGTTCATTTGCACTTCAGATTATGCATTTAGCACTTGCAAATTTGCTTCACGGATTTGAAATTGAAAGGCCATCTCAAGACCTAATTGATATGGAAGAAAGTGCTGGTATGGTTAGCATTAAAAAGGAGCCACTCCGAGTTATTATAAGCCCACGCCTCCAACCTCAACTTTATGAATGA 1566 41.0 MDLSQLSLSATVVTGIFSLLLFLYALFDISTRVAGARRNKLPPELPGRWPVIGHLHLLNATEPAHITLAKFADTYGPIFTLKLGMNKALVVSSWEIAKECFTTNDRIFASRPKLVASKLLGYNYTMFGLSPYGSYWRHIRKLATLELLTNRRLHQLQHIREFEVQTSIKKLYELCIRNKKSLVEMNTWFGDITLNTIFRMVVGKRFSMAMDGSANGNDVYRMALRDFFEWFGVFVPSDSFPFLKWFDLGGHEKAMKKTAKILDEVFDKWLQEHRLRRKFEESENDFMDVLLSNVKDAEQFSNYDADTVIKSSCLALILAGFDTTTVTMIWTLSLLLNNPEALKRAQLELDEQIGRHKQVKESDIEKLKYLEAIVKEALRLYPPGPLGVPHESTDDCKIAGYHIPAGTRLMVNIQKLQRDPCVWEDPCEFRPERFLTSHKDFDVRGKCPMLIPFGTGRRMCPASSFALQIMHLALANLLHGFEIERPSQDLIDMEESAGMVSIKKEPLRVIISPRLQPQLYE* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36576709 36579608 + CsaV3_3G044700.1 Csa03g04164 525069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04164 521 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 Pfam Cytochrome P450 43 509 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Csa03g04164 521 PANTHER CYTOCHROME P450 82C3-RELATED 40 521 - -
Csa03g04164 521 SUPERFAMILY Cytochrome P450 43 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 Coils Coil 342 362 - -
Csa03g04164 521 PANTHER CYTOCHROME P450 40 521 - -
Csa03g04164 521 Gene3D Cytochrome P450 30 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04164 521 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04164 - - - csv:105434433 1054.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04161 Csa-Chr3:36557638 Csa03g04164 Csa-Chr3:36576709 0 dispersed
Csa03g04164 Csa-Chr3:36576709 Csa03g04166 Csa-Chr3:36594231 0 dispersed
Csa03g04163 Csa-Chr3:36571830 Csa03g04164 Csa-Chr3:36576709 0 tandem
Csa03g04164 Csa-Chr3:36576709 Csa03g04165 Csa-Chr3:36583366 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442