Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04165 ATGGAATATCTCAACACCCTCTTCGGAATAATCTTTCCTCTTCTCATCTTTTTCTATCTTCTCTTCACTTGTTCCCGGAGATCAGTCGCTCAACGGAAGAGGCTCCCACCGAAGGCTGGTGGCGCTTGGCCAGTGATTGGCCACCTCCATTTACTAAATGCAAGTGAGCCAACTCACATAACATTAGCCAAAATGGCGGATGCATATGGACCAATGTTCACATTTAGGTTCGGTATGAAAAGGGCGTTGATTGTAAGCAATTGGGATCTAGCAAAAGAGATCTTTACGACAAACGACAGAATCTTCGCGTCTCGTCCAAAGCTTGTAGCCTCAAAAATCCTTGCCTATGACTATGCCATGATGGGATTCAGCCCGTACAGTCCACACTGGCGCTATGTACGAAAAATAGCCACACTCGAACTCCTGACGAACCACCGTGTGGACCAGCTCCAATACATAAGAGCATTTGAGGTCGAGACATGGATGGAGGAACTTTATGAGTTATGGAGGCTCAATAACAAAGGTGAAAAAGTGGTGGTGGAAATGAAAAAGAGATTGGCAGACGTAACGCTGAATACAATGTTCAAGATGGTGATTGGGAAGAAATTTTCCTCTATGGAGTATGGTAATGAAAAGTTTCAAAAGGTGTTGATAGAGTTCTTTGGATTGTTTGGTATATTTATTCTATCGGATTCGTTTCCATTTCTGAGTTGGTTAGACTTGGGAGGACATAAGAAAGTCATGAAGAAGACAGCCAAAATAATGGATGAGGTGTTTGATAAATTCCTCAAAGAGCATCGGGAGAGGATAAATAATTTTGGTGAACTACCGGCGGCGGAAAAGGACTTCATGGATGTTATGATTTCTACAGTTGAAGACGATGGACAACATTTCAATTGCCATGTTGATACTGTTATTAAAGCTACATGCTTGAATATGATATTAGGTGGATTTGACACAACAACAGTTACAATGACATGGGCTCTTTGTTTACTTCTCAACAATAAAGAAGCACTCAAGAAGGCTCAAGTTGAATTAGATGAACAAGTTGGGAGAGAAAGACAAGTGAAAGAGACGGATTTGAAAAATCTACCATATCTCCAAGCTATTGTTAAGGAAACTCTACGATTGTATCCTGCTGCACCACTGTTAGTCCCTCATGAATCTATAGAAGATTGCACAGTTGCTGGCTATCACATACCTAAAGGAACACGCCTCATAGTTAATGTTCAAAAACTTCAAAGAGATCCACTTGTTTGGGAGGATCCATTTGAATTTCGACCAGAAAGATTTTTAACAAGTCAAAAGAATTTTGATGTTAGAGGACAAAATCCCCAATTCATACCGTTTGGAAATGGTCGAAGGATGTGCCCTGCAATCTCATTTGCACTTCAAATAATCTATCTTACACTCTCAAACTTTCTTCATGGGTTTGAAATTGATAGACCATCAGAAGAACTACTTGACATGGAAGAGAGTATTGGATTGACAAGCCTTAAAAAAACCCCACTCGAAGTTGTTTTAACTCCACGCCTACCTTCACATCTTTATGGTTAA 1557 40.4 MEYLNTLFGIIFPLLIFFYLLFTCSRRSVAQRKRLPPKAGGAWPVIGHLHLLNASEPTHITLAKMADAYGPMFTFRFGMKRALIVSNWDLAKEIFTTNDRIFASRPKLVASKILAYDYAMMGFSPYSPHWRYVRKIATLELLTNHRVDQLQYIRAFEVETWMEELYELWRLNNKGEKVVVEMKKRLADVTLNTMFKMVIGKKFSSMEYGNEKFQKVLIEFFGLFGIFILSDSFPFLSWLDLGGHKKVMKKTAKIMDEVFDKFLKEHRERINNFGELPAAEKDFMDVMISTVEDDGQHFNCHVDTVIKATCLNMILGGFDTTTVTMTWALCLLLNNKEALKKAQVELDEQVGRERQVKETDLKNLPYLQAIVKETLRLYPAAPLLVPHESIEDCTVAGYHIPKGTRLIVNVQKLQRDPLVWEDPFEFRPERFLTSQKNFDVRGQNPQFIPFGNGRRMCPAISFALQIIYLTLSNFLHGFEIDRPSEELLDMEESIGLTSLKKTPLEVVLTPRLPSHLYG* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36583366 36586076 + CsaV3_3G044710.1 Csa03g04165 525070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04165 518 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 Pfam Cytochrome P450 37 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 Gene3D Cytochrome P450 21 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PANTHER CYTOCHROME P450 33 517 - -
Csa03g04165 518 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 SUPERFAMILY Cytochrome P450 42 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04165 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Csa03g04165 518 PANTHER CYTOCHROME P450 82C3-RELATED 33 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04165 - - - csv:101212976 1017.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04159 Csa-Chr3:36543792 Csa03g04165 Csa-Chr3:36583366 1.89E-159 dispersed
Csa03g04160 Csa-Chr3:36551779 Csa03g04165 Csa-Chr3:36583366 4.71E-154 dispersed
Csa03g04162 Csa-Chr3:36561588 Csa03g04165 Csa-Chr3:36583366 0 dispersed
Csa03g04163 Csa-Chr3:36571830 Csa03g04165 Csa-Chr3:36583366 0 dispersed
Csa03g04165 Csa-Chr3:36583366 Csa03g04169 Csa-Chr3:36603782 0 dispersed
Csa03g04164 Csa-Chr3:36576709 Csa03g04165 Csa-Chr3:36583366 0 tandem
Csa03g04165 Csa-Chr3:36583366 Csa03g04166 Csa-Chr3:36594231 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g855 . Blo12g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01622 Csa03g04165 . . . . . . . . . . . . . . . . . . . Bhi09g02052 . . . . . . Cla05g01973 . . . . . . . . . Cme04g00638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442