Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04166 ATGGAATTACAATTCTCAGCTTCATTCTCCTCTCCCAAAATAATGATCTCTATGTCTCTATTTATTCTCATATTCTTTCTCTATACTCTCTTCTGGCTTTTAAATCTTACATCATTATTCACGTCTCAACGTCGTAAAAACAACCTCCAGCCACTCCCAGTAGCCCGCGGCGCCTGGCCGGTGATCGGCCACCTTCATCTCCTAAGCTCGTCTGAACCAGGCCACAAAACCTTGGGCAAAATGGCAGATTCCAATGGACCAATTTTCACATTGAAATTGGGTATCCATAGAGCAATAGTCGTGAGCAATTGGGAAATTGCACAAGAGTGTTTAACTACAAACGACATAATATTTGCATCACGCCCTAAACTTACTTCCGCAAAGCTACTAGGCTATAATAATTCAATGTTTGGCCTTGCGCAATACGGCCCTTTCTGGCGTCACATGCGCAAAGTAGTCTCTCTTGAACTCCTCTCCACTCATCGTCTCCAACAATTTCAACCCATCAGAATATCTGAAATCCAGAGTTCCATCAACAAGCTATACCAGTTATGTACCAAAGAGAAACCGTTGGTGGAGATGAAGGCGTGGTTCGAAGACATAACACTCAATATCATGTTCAAAATCATCTTCGGAAAGCGATTCACCGACGATTTAAAAGGAGATCAAGATCATCGAAAGACGTTCAGGAATTTAATGGAGTTATTTGGAGTGTTTGTACCATCTGATTCGTTACCGTTTTTGAGTTGGTTGGATTTGGGAGGATATGAAAAGGCTATGAAAACGACATCAAAAGTCTTAGACGAGGTGTTTGATAAATGGCTTGAAGAACATCGTCAAAGGAAAATTGAAAACAATGATAATGGTGCAGAGGACTTCATGGATGTGATGCTTTCTATCATTAAAGATGATGATGAACAACTTTCTGGCTATGTTGGCGATTCAGTCATAAAGGCTAATTGTTTGGCTATGATATTGGCTGGATCTGATACTACTACAACAACAATGACATGGACTCTTTCTTTACTTCTAAACAATCAAGAAACACTTAAAAAAGCTCAGATTGAGTTGGAAGAACAAGTTGGGAGACAAAAACAGGTGACAGAATCCGATGTCAAAAATTTAATATATCTCCAAGCTATTGTGAAGGAATCTTTACGTCTTTATCCTGCTTTACCAATCTCAATCCCTCATGAATCTACTGAAGATTGTTCTATTTTTGGCTACCATATCCCCTCAAGAACACGCCTAATAGTAAATATTCAAAAGCTCCAAAGAGATCCTCTTGTTTGGGAGGAACCTAATGAATTTCGGCCAGAAAGATTTCTAACAACTCATAAAGACTTCGATGTTAGAGGTCAAAATCCTCAATTGATTCCATTTGGAAATGGTCGAAGGATGTGTCCTGGTACATCTTTTGCCTTCCAAATTATTCATCTTACGCTTGCAAATCTACTTCATGGATTTGAAATTGATAGACCATCAAAGGATTTACTTGATATGGAAGAGAGTGTTGGACTGACCAGTACTAAGAAATCTCCACTCGAGGTTGTTTTAACTCCACGGTTGCCTGCTCTAGGTTCCCATTGA 1590 39.56 MELQFSASFSSPKIMISMSLFILIFFLYTLFWLLNLTSLFTSQRRKNNLQPLPVARGAWPVIGHLHLLSSSEPGHKTLGKMADSNGPIFTLKLGIHRAIVVSNWEIAQECLTTNDIIFASRPKLTSAKLLGYNNSMFGLAQYGPFWRHMRKVVSLELLSTHRLQQFQPIRISEIQSSINKLYQLCTKEKPLVEMKAWFEDITLNIMFKIIFGKRFTDDLKGDQDHRKTFRNLMELFGVFVPSDSLPFLSWLDLGGYEKAMKTTSKVLDEVFDKWLEEHRQRKIENNDNGAEDFMDVMLSIIKDDDEQLSGYVGDSVIKANCLAMILAGSDTTTTTMTWTLSLLLNNQETLKKAQIELEEQVGRQKQVTESDVKNLIYLQAIVKESLRLYPALPISIPHESTEDCSIFGYHIPSRTRLIVNIQKLQRDPLVWEEPNEFRPERFLTTHKDFDVRGQNPQLIPFGNGRRMCPGTSFAFQIIHLTLANLLHGFEIDRPSKDLLDMEESVGLTSTKKSPLEVVLTPRLPALGSH* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36594231 36596608 + CsaV3_3G044720.1 Csa03g04166 525071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04166 529 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 106 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 Gene3D Cytochrome P450 38 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 Pfam Cytochrome P450 58 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Csa03g04166 529 PANTHER CYTOCHROME P450 52 525 - -
Csa03g04166 529 PANTHER CYTOCHROME P450 82C3-RELATED 52 525 - -
Csa03g04166 529 SUPERFAMILY Cytochrome P450 58 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g04166 529 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04166 - - - csv:101207850 1043.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04164 Csa-Chr3:36576709 Csa03g04166 Csa-Chr3:36594231 0 dispersed
Csa03g04166 Csa-Chr3:36594231 Csa03g04169 Csa-Chr3:36603782 0 dispersed
Csa03g04165 Csa-Chr3:36583366 Csa03g04166 Csa-Chr3:36594231 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442