Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04172 ATGTTCTCAAAAGCCTTCACGTTTAGTAAAAACATTCAGGACTTGGCTTCTGAAATGTTCCCAGGCCAAGTTGAAGCTGCTTTGAAAGAGCCTCCTGGTAACAAAACGGCGCCGGATAGAGTTATCGTCGCTGTCAAGGCTGAGAGAGTGATTTCCAAATCTGCACTGGCTTGGGCTCTAACTCATGTCGTCCGTCCTGGTGACTGTATAACACTACTTGCCGTCTTCTCTGTCGAGAAAACTGGCAGAAGATTCTGGAATTTTCACAGATGGAGCGGGGATTGTGCGAGTGCTGTCCAAGAGAATCTGCCGGATCGAGTACACGAGATCTCCGAGTCTTGTTCTCAGATGGTGCTTCATTTCCACAATCAAGTTGAGGTTCAAGTGAGGATTAAAGTGGTCACGGGAACACAAGGAGGATCTGTCGCTTCTGAAGCAAAGTTAAAAGGAGTTAACTGGGTCATACTAGACAGGAAATTGAAGAACGAGGTAAAGAGTTGCCTGGAAGAACTTAGCTGCAATATTGTTACTATGAAAGGATCTCAACCGAAAGTTCTGAGACTTAACTTGGAGTGCTGGAGTGAACCTCAAACTCCCTTTTTTTCAGCTAATTCTTCTCCTGTTCGAAAAGTTCAACAAAATAGGATGAAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACCCGGTGCCTCATTCAGGAAATCCTCAAAAGAAGTGTCAAAATTGGGTACTGAGGCGGTGTCTTCTATTTTCCTTGTATATGAGCAAAACCCGCTATATGAAGGAAACTTGAAAGGAAATCATTTGCCAATTAATGAGACTGACGATTTAAGCATGTCATTATCTTCATCCACCCAAATGGAAGAAAAAGTTCTATCTCTACCTCCAACATATGTGGCCTCAAATCAAAAATGTGTCTATTGGATTTCTCAGAACCATAACATTTCGGAAGGAAAAACTTTATCCAAGTCCAAAAGAAGATTCCTTAGATTTGCATCAACTCCGAAGGTGCCATTCAGTAATCCTACAAGTCTTGAGAAGAGTACGACTTTTGAAGATATGAGGCTCAACCAATCTGAGAGAAAAGACTACATTGTGGACTCAAATATCAGGGATGCTGTCTCCTTAGGCAGAGCATCCTCTGCACCCCCTCCTCTGTGTTCAATATGTCAACACAAAGCACCAGCTTTCGGAAAACCTCCTAGACAGTTCTCACTCAAAGAGCTCGAAGAAGCAACCGACAGATTTTCGGATATGAACTTCTTAGCAGAAGGTGGTTTCGGAATTGTTCATAGAGGAATCTTGAGAGACGGCCAAGTTGTAGCCGTGAAGCAGTTGAAATGTGGAGGCTTACAAGCAGATGCTGATTTTTCTCGGGAAGTTCGAGTGTTGAGTTGTGCACAACACAGAAATGTTGTGTTGCTGATTGGATTTTGTATAGAGGACACAATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCGTTGGATTTCCATTTACATGGGAATGGAAGCCAGTTAGATTGGCATTCAAGGCAAAAAATAGCAATAGGAGCAGCGCGGGGTTTGCGTTATCTTCATGAAGATTGCAGAGTTGGGTGCATAGTGCATAGAGACATGAGACCTCACAATATCCTCCTAACACATGATTTTGAACCCATGGTTGCTGATTTCGGACTGGCGAGATGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAAGTCATTGGAACTTCCGGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACATAAAGTGGACGTTTATGCATTTGGCATGGTTTTATTAGAGTTGATTAGTGGCAAAAGAAGCTGTGAGCTTCACCGTCTAGAGGGAAAACAATTCATATCAGACTGGTTCCACCCCATCTCTGCCTTGCAAATTCAACATTTACTAGCTAGTAGTAATCATTTAATAGATCCATGCATGGCATCTGAGCAATCCCCCGACTTCTATTATCAACTGCATTCTATGGTTCGTGCCGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTACTCGAAGGAGGAGATCCAGTTGTTCCTCTTGGTTTAGACTTCGACCCAGTCGGCTGCAGAAGTGCACACTTGGATGGTCTGACGTCTCACAACCAAATCGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGA 2223 43.36 MFSKAFTFSKNIQDLASEMFPGQVEAALKEPPGNKTAPDRVIVAVKAERVISKSALAWALTHVVRPGDCITLLAVFSVEKTGRRFWNFHRWSGDCASAVQENLPDRVHEISESCSQMVLHFHNQVEVQVRIKVVTGTQGGSVASEAKLKGVNWVILDRKLKNEVKSCLEELSCNIVTMKGSQPKVLRLNLECWSEPQTPFFSANSSPVRKVQQNRMKQTTPLASRPEEEPGASFRKSSKEVSKLGTEAVSSIFLVYEQNPLYEGNLKGNHLPINETDDLSMSLSSSTQMEEKVLSLPPTYVASNQKCVYWISQNHNISEGKTLSKSKRRFLRFASTPKVPFSNPTSLEKSTTFEDMRLNQSERKDYIVDSNIRDAVSLGRASSAPPPLCSICQHKAPAFGKPPRQFSLKELEEATDRFSDMNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFSREVRVLSCAQHRNVVLLIGFCIEDTMRLLVYEYICNGSLDFHLHGNGSQLDWHSRQKIAIGAARGLRYLHEDCRVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVIGTSGYLAPEYINGGMVSHKVDVYAFGMVLLELISGKRSCELHRLEGKQFISDWFHPISALQIQHLLASSNHLIDPCMASEQSPDFYYQLHSMVRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLDGLTSHNQIEARRSHTRTLSQ* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36622788 36626898 + CsaV3_3G044780.1 Csa03g04172 525077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04172 740 MobiDBLite consensus disorder prediction 204 239 - -
Csa03g04172 740 Pfam Protein kinase domain 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04172 740 SUPERFAMILY Protein kinase-like (PK-like) 400 696 IPR011009 -
Csa03g04172 740 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 731 - -
Csa03g04172 740 Gene3D Transferase(Phosphotransferase) domain 1 494 701 - -
Csa03g04172 740 ProSitePatterns Tyrosine protein kinases specific active-site signature. 538 550 IPR008266 GO:0004672|GO:0006468
Csa03g04172 740 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Csa03g04172 740 PANTHER OS01G0253100 PROTEIN 35 731 IPR045271 GO:0004714|GO:0006468
Csa03g04172 740 MobiDBLite consensus disorder prediction 204 221 - -
Csa03g04172 740 ProSiteProfiles Protein kinase domain profile. 418 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04090 Csa-Chr3:35841358 Csa03g04172 Csa-Chr3:36622788 0 dispersed
Csa03g04172 Csa-Chr3:36622788 Csa06g01929 Csa-Chr6:17387432 1.46E-88 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78085 PF00069 Pkinase 5.90E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04172 - - csv:101207605 1492.25