Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04173 ATGGCACATTCCGACCCCAACATTTCCTCCACCCTAACGGAAGAAGATTTTGCCATGAGAAACAGCAGCGCTTCTGTTGGTGGCCAAGCATTTTATGATCAGAGTCGTATGAGTGGCGAAGGCTCTCCCATGACAATGTCGCCATGGAATCAAACCTCCATGTTTGCTAAATCTCCATGGTCTCAAGTGGAAGAGAACAGCGGTCCACAAAATGGATTAATTGGCTCTCTTGTTCGTGAAGAAGGCCATATCTATTCCTTAGCTGCTTCAGGGGAGCTTCTTTACACTGGCTCCGACAGCAAGAACATTCGAGTTTGGAAGAATTTGAAGGAATATGCTGCATTTAAATCCAGCAGTGGGTTGGTGAAAGCCATTATCATCTCAGGCGAGAAGATTTTTACTGGACATCAAGATGGGAAAATCCGCGTCTGGAAGGTATCACAAAAGAACCCAAGTGACCATAAACGAGCTGGAACATTGCCAACATTGAAAGACATATTCAAAAGCTCAATCAATCCGAACAATTACGTTGAAGGACGAGGACGTCGAAGGGCTCTATGGATCAAACACTCTGATGCAGTGTCTTGTTTGAGCTTAACTGAAGACAAGCTGCTTTTATACTCTGCCTCATGGGATAGAACACTGAAGGTATGGAGAATTGCAGATTCAAAATGCTTGGAATCACTGAATGTGCACGATGATGCAGTGAATTCAGTTGTGGCAAGTGTGGAAGGGCTGGTGTTTACAGGGTCAGCAGATGGGACAGTGAAGGTGTGGAAAAGGGAAGCGAAAGGGAAGGCAACAAAGCACACTCTATTGGAGTCATTGTTGAAGCAAGAATGTGCAGTGACTGCGTTGGCAGTGACAGCAGCGGGAACCGTCGTGTATTGTGGGTCATCTGATGGGATGGTGAATTTCTGGGAAAGAAAAGGGAAATTGACACACGGTGGGGTTCTGAAAGGGCATAAGCTGACTGTGTTATGTTTAGTGGCAGTGGGGAGTATGGTGTTTAGTGGCTCAGCTGATAAGACTATATGTGTGTGGCGTAGAGAAGGGGCAGTCCATACATGTCTGTCAGTGCTGACCGGGCATACTGGGCCAGTTAAATGCTTGGCGGCGGAAGAAGATAATGAGTCGTCGAAGAATGGGGACAGGCAGTGGATAGTGTATAGTGGGAGCTTGGATAAGTCAATTAAGGTGTGGCGAGTATCTGAGATGGCGGCGGATAGGAATGCAGTGGCAATGATGCAACAACAATTTATGAATGATTCAGACTCAATGCCATCAGATAGAAGCTTCTCCTCTTCCAACAGAGCAATCAGCATAAGCAAACAACCGTGA 1341 46.23 MAHSDPNISSTLTEEDFAMRNSSASVGGQAFYDQSRMSGEGSPMTMSPWNQTSMFAKSPWSQVEENSGPQNGLIGSLVREEGHIYSLAASGELLYTGSDSKNIRVWKNLKEYAAFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVSQKNPSDHKRAGTLPTLKDIFKSSINPNNYVEGRGRRRALWIKHSDAVSCLSLTEDKLLLYSASWDRTLKVWRIADSKCLESLNVHDDAVNSVVASVEGLVFTGSADGTVKVWKREAKGKATKHTLLESLLKQECAVTALAVTAAGTVVYCGSSDGMVNFWERKGKLTHGGVLKGHKLTVLCLVAVGSMVFSGSADKTICVWRREGAVHTCLSVLTGHTGPVKCLAAEEDNESSKNGDRQWIVYSGSLDKSIKVWRVSEMAADRNAVAMMQQQFMNDSDSMPSDRSFSSSNRAISISKQP* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36627485 36628825 - CsaV3_3G044790.1 Csa03g04173 525078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04173 446 PANTHER PROTEIN JINGUBANG 2 433 - -
Csa03g04173 446 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Csa03g04173 446 Pfam WD domain, G-beta repeat 356 401 IPR001680 GO:0005515
Csa03g04173 446 Pfam WD domain, G-beta repeat 190 218 IPR001680 GO:0005515
Csa03g04173 446 Pfam WD domain, G-beta repeat 81 107 IPR001680 GO:0005515
Csa03g04173 446 Pfam WD domain, G-beta repeat 317 348 IPR001680 GO:0005515
Csa03g04173 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Csa03g04173 446 Gene3D - 178 267 IPR015943 GO:0005515
Csa03g04173 446 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Csa03g04173 446 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Csa03g04173 446 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Csa03g04173 446 MobiDBLite consensus disorder prediction 422 446 - -
Csa03g04173 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 70 107 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 180 219 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 222 260 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 108 145 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 354 402 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 312 349 IPR001680 GO:0005515
Csa03g04173 446 SMART WD40_4 269 308 IPR001680 GO:0005515
Csa03g04173 446 Gene3D - 60 177 IPR015943 GO:0005515
Csa03g04173 446 Gene3D - 268 444 IPR015943 GO:0005515
Csa03g04173 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Csa03g04173 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Csa03g04173 446 SUPERFAMILY WD40 repeat-like 80 406 IPR036322 GO:0005515
Csa03g04173 446 CDD WD40 81 402 - -
Csa03g04173 446 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 2 433 IPR045182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04173 - - - csv:101212251 861.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02011 Csa03g04173 CCT
Csa02g02011 Csa03g04173 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02378 Csa-Chr3:21622980 Csa03g04173 Csa-Chr3:36627485 3.44E-06 dispersed
Csa01g00089 Csa-Chr1:541500 Csa03g04173 Csa-Chr3:36627485 4.03E-64 transposed
Csa01g00821 Csa-Chr1:5171314 Csa03g04173 Csa-Chr3:36627485 1.85E-82 transposed
Csa02g01501 Csa-Chr2:14344761 Csa03g04173 Csa-Chr3:36627485 1.60E-174 transposed
Csa03g04003 Csa-Chr3:34978518 Csa03g04173 Csa-Chr3:36627485 2.85E-10 transposed
Csa04g01225 Csa-Chr4:10872018 Csa03g04173 Csa-Chr3:36627485 1.45E-06 transposed
Csa05g01637 Csa-Chr5:19461562 Csa03g04173 Csa-Chr3:36627485 1.52E-81 transposed
Csa05g02258 Csa-Chr5:25225144 Csa03g04173 Csa-Chr3:36627485 3.62E-69 transposed
Csa07g00816 Csa-Chr7:5720257 Csa03g04173 Csa-Chr3:36627485 0 transposed
Csa02g02011 Csa-Chr2:18654351 Csa03g04173 Csa-Chr3:36627485 4.72E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28