Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04186 ATGGATAATTTGTCGCAGAGAGACAGCATCCTTTTGGGTTATTCACTTCAGAGATCATCTGCTAACTCTTCATCTCCAAGAGCTTCCAATCGGAATTCAGACGATGTTGATTTTCATGACGTGTTCGGTGGTCCTCCGAGGAGGCGGTCGTCGGTTCATGAAACGAGATATAGCTTCTCCGAGACAGGGGACTCCTTTGCATTGAAAGGTGGCGAGGATGAAGCACTACCTGGCCGGAGTGGCCCTTGGTCTGGTTTGAATGAGAAACCTGTGTTTGGTGAGGAAGGTGTACACGGGCGGCGATTTCCGAGTGATGATTTTTATGATGATATCTTTAAAGGCGATGAATCGGTGAATTCTTCTCCTCGCCGGGGTGACATTTTCTCTCCGAATCCTGGTTCAAGAGTTCTAAGTCCTGCTAGACCTCTTCCACCGCCGGCAGAACCCTTCGGAAGTTCTTCCCTCCCTGCTCAATTAAGCAGCCTACCATCAAGATTAGCCAAAGGGACTGATTTACCAGCCTTCGGATCGAGCTCCTTAAGAAACAAGGATAGTGTTTCGAATGGAAGTCATACAAATTCTCCTAGGTTCACTCTTTCTAGATTTTCTTTTAGCACATCGAGCCATCGTTTCGAGGATCCTAAAACTGATTATGATTTGTCGGATCGTACTGGTGTTTTGCCATCTGAATTCCAAGAAAATGACGGTGATGAAGCATTGTCCTTCATAAACTCTGGAAATGGATTGAGTGGGAACAGTTTAACAAAGGGAGAAGAAGATAGTTTAGAAGAATCAAATGGTGGTGGTCAATTTCAGTTCCATTTCTCAATTTACAAATGGGCAAGTAAAGGGGTGCCTCTAATGATGCCATCGAGAGGGAACGGGCCAAGATTAAGAGAAAAGACTCTACTAAGAAAAAGCTCAAGCTCGACCGATAGGTTAGTGAAGGCTAAAAATGAAATGCATTCCCCAACATCAACTATACAGAATATTGATATTTCTCCAGTTTTTCATGAAACAACAAAGGTTGATGATGAAAAAGGAATTGATATACTGCCTGACACGGGTAATCTTGATCAAAGACAAAGTTCATTCACACCTTCAAAAAACTTGAGCAGACAAAGTTCTCGCACGGCCGTTGGCAGTGATAACATCAGTCGCCCAACGGAGAAAGAGAAACCTCATTCTTTACCTAAGAAAGTTTCAAGTGAAAAGCCAGCGAAAAAGATGACTTCGAGGACAATCGAAGATCAAAAGCATGAGGCTAAATCTTTAAGTTCCTTTCTTCTCTACAGTGATAGTGAGCAAAGTGAAGAGAGGATAACCAAAGAGTATCGTAAAGGAGAAATCATGGCAAAAGGTGACATGAAATCATCAAATCTCTCTGATTTAAGTAGTCCAAAGAAACTAGAAAAACAAACTTCATTGAGAAATTCAAAAGTGAAAAAACCTACTGTCCCAAGTTCAGACGTGGAATCTGGACATAACATTGGCAGAAAGAAAGTTGGTGGAAAAATTTCAGAGTTTGTTAAGCTTTTCAACCAAGAACCTACATCGAAACCCCAGGATGTTGTCGATTTAGAAAATGATAGCTCTACAATGAAACAGGAAAGTGAACCAAAGGGTCCAACTGTTAACAAAATAAGAAAGGATGAGAAACCCAAGTTGAATAAGAACACAGATGCTTCCATCAAGGGAGATAATATTTCCGAGAAATCAGTGGATGATAACTCTACTAAAAAAGCTGCTAGCTTCAAAAATAACTTTGCTTCTTCCAAAGAGAGTAGTCCAGCTCCAAACACAGTTCACGTTCCTAATGTCACAAAGTCTACAGTTTCAGAAGTGGAGGAGCCCTTTCAGGATAATTTCTCGGTACAAGAGTTACCACAAGATTATGAAGATTCCACAGAAACAAACAATGGTCGTGAAGAAGTACAAGCTCTCGATACTAAAATACGACAATGGTCAAGCGGGAAGGAAGGGAATATTCGTTCCCTGCTGTCAACTTTGCAATATGTTCTTTGGCCCAAGAGCGGATGGAAAGCCGTTCCTCTTGTTGATATAATCGAAGGAAATGCAGTGAAAAGATCTTATCAAAAAGCTTTGTTATACCTACACCCTGATAAGCTACAACAGAAGGGTGCTTCATCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAAATATTACAGGAGGCTTGGATTCATTTCAATACATTGGGTGGATTATGA 2232 41.04 MDNLSQRDSILLGYSLQRSSANSSSPRASNRNSDDVDFHDVFGGPPRRRSSVHETRYSFSETGDSFALKGGEDEALPGRSGPWSGLNEKPVFGEEGVHGRRFPSDDFYDDIFKGDESVNSSPRRGDIFSPNPGSRVLSPARPLPPPAEPFGSSSLPAQLSSLPSRLAKGTDLPAFGSSSLRNKDSVSNGSHTNSPRFTLSRFSFSTSSHRFEDPKTDYDLSDRTGVLPSEFQENDGDEALSFINSGNGLSGNSLTKGEEDSLEESNGGGQFQFHFSIYKWASKGVPLMMPSRGNGPRLREKTLLRKSSSSTDRLVKAKNEMHSPTSTIQNIDISPVFHETTKVDDEKGIDILPDTGNLDQRQSSFTPSKNLSRQSSRTAVGSDNISRPTEKEKPHSLPKKVSSEKPAKKMTSRTIEDQKHEAKSLSSFLLYSDSEQSEERITKEYRKGEIMAKGDMKSSNLSDLSSPKKLEKQTSLRNSKVKKPTVPSSDVESGHNIGRKKVGGKISEFVKLFNQEPTSKPQDVVDLENDSSTMKQESEPKGPTVNKIRKDEKPKLNKNTDASIKGDNISEKSVDDNSTKKAASFKNNFASSKESSPAPNTVHVPNVTKSTVSEVEEPFQDNFSVQELPQDYEDSTETNNGREEVQALDTKIRQWSSGKEGNIRSLLSTLQYVLWPKSGWKAVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASSDQKYIAAKVFEILQEAWIHFNTLGGL* 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36728775 36732227 - CsaV3_3G044920.1 Csa03g04186 525091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04186 743 MobiDBLite consensus disorder prediction 512 529 - -
Csa03g04186 743 SUPERFAMILY Chaperone J-domain 642 734 IPR036869 -
Csa03g04186 743 MobiDBLite consensus disorder prediction 137 151 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 436 453 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 93 120 - -
Csa03g04186 743 Gene3D DnaJ domain 639 742 IPR036869 -
Csa03g04186 743 MobiDBLite consensus disorder prediction 458 472 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 15 31 - -
Csa03g04186 743 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 736 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 625 644 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 386 423 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 356 385 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 246 266 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 303 319 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 303 333 - -
Csa03g04186 743 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 736 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 32 55 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 175 192 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 347 579 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 542 560 - -
Csa03g04186 743 MobiDBLite consensus disorder prediction 15 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04186 - - - csv:101211029 1417.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04186 Csa-Chr3:36728775 Csa04g02047 Csa-Chr4:20719579 7.34E-34 dispersed
Csa03g04186 Csa-Chr3:36728775 Csa03g04228 Csa-Chr3:37027397 1.23E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40