Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04189 ATGCCATCTTATATGTCAAAACTACGAGCGCCGGTTAAATTTCTAGGGTGGGAAGGTGGATTGAAAAGTTCGTTGGAGTTGCTTTTGGGGCATCAGAAACTGTTGTGTGGCAATTCTAGTCTTTTTCACTCCGTTCCGTGTTCCTCACTTACAGAGTTGCATGCTCTCTTGAGACCTGGCGCTATTTCCGGTGCTAGTTCAGAGCTAGTTAATCGCCGGAGGAATATCTCAGTTCTTGGGGCAATTTCTCGCACATTTTCTATTCCCTCCGTGTCAGGCCCTGCATTGCAGACTTGTGGGTATCATATTGATTGTGCCATTGCTCAATCCTATCAATATTCAACTCACAGCAAGTGTCAAGATAAACCAATGGCCGCTTGTGGTTCTAGAGCTACCCTTGGTGAATGTTCTCTTGATAAATTAAGTTTTAGGAATGCTGCATACTTGTCTCCTTCAGCGATCACTGCTGGTATTTCTTTTAATAGAAGTGTTGATAGCTGTAGGAAAGCCAGCATGAGTTTGAAAAATCAGGAGCAGCCTAACAATAATGGGATATATGGATACGTCACTTACAATGTTGCAAAAAGGTTTTGCAGCAGTTACCTAAATACTGTACCAGGAGTAAAAGATCTTCATAGTTCATCAACTTCTCAGTTTGCTGCTGGTTCTGCCCCCAATGTGTCATTTGATAACTCTGCACGGGAGGAACAACTTGCGAACTCTACTGATTCATCTGAACAGAAAATCTCAATGGGCAAATCATTGAAACTGGTTTCTGGGTCATGCTATCTACCCCATCCTGATAAAGAAGATACTGGTGGAGAAGATGCTCATTTTATCTGTGTTGATGAACAAGCTGTAGGGGTGGCTGATGGTGTGGGTGGGTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTCATGTCTAATTCGGTTAGTGCAGTTCAAGAAGAGCCCAAGGGCTCAATTGATCCAGCTAGAGTCTTGGAGAAGGCCCACTCAAAAACAAAAGCCAAAGGTTCATCCACTGCTTGTATCATAGCGCTTACAGAACAAGGCCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACTATCTTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACGTTTCAATTGGAGAGTGGAAACAATGGAGATTTGCCTAGCTCTGGACAGGTTTTCTCAGTCCCTGTTGCTCCTGGGGATGTCATAATTGCTGGCACCGATGGACTCTTTGACAACTTGTACAACAATGAGATCACTGCAGTGGTGGTTCATGCCATGAGAGCGGGCTTAGGCGCTCAGGTGACTGCCCAGAAGATAGCTGCCCTTGCACGCCAACGAGCTCAAGATAAAGACCGACAAACACCTTTTTCCACTGCTGCTCAAGATGCTGGGTTTCGCTATTACGGTGGCAAGCTTGATGACATCACCGTGGTTGTGTCGTATGTCACAAGCTCCAACGATAAGTGA 1512 45.11 MPSYMSKLRAPVKFLGWEGGLKSSLELLLGHQKLLCGNSSLFHSVPCSSLTELHALLRPGAISGASSELVNRRRNISVLGAISRTFSIPSVSGPALQTCGYHIDCAIAQSYQYSTHSKCQDKPMAACGSRATLGECSLDKLSFRNAAYLSPSAITAGISFNRSVDSCRKASMSLKNQEQPNNNGIYGYVTYNVAKRFCSSYLNTVPGVKDLHSSSTSQFAAGSAPNVSFDNSAREEQLANSTDSSEQKISMGKSLKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAVGVADGVGGWADLGVDAGQYSRELMSNSVSAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQGLHAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGAQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVTSSNDK* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36737678 36742516 - CsaV3_3G044950.1 Csa03g04189 525094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04189 503 SMART PP2C_4 248 495 IPR001932 -
Csa03g04189 503 PANTHER PROTEIN PHOSPHATASE 87 502 - -
Csa03g04189 503 SMART PP2C_SIG_2 271 497 IPR001932 -
Csa03g04189 503 Pfam Stage II sporulation protein E (SpoIIE) 285 497 IPR001932 -
Csa03g04189 503 SUPERFAMILY PP2C-like 261 494 IPR036457 -
Csa03g04189 503 Gene3D - 400 502 IPR036457 -
Csa03g04189 503 ProSiteProfiles PPM-type phosphatase domain profile. 261 497 IPR001932 -
Csa03g04189 503 PANTHER PROTEIN PHOSPHATASE 2C 87 502 IPR039123 -
Csa03g04189 503 Gene3D - 269 389 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04189 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 956.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02549 Csa-Chr1:22457669 Csa03g04189 Csa-Chr3:36737678 5.42E-44 dispersed
Csa03g04189 Csa-Chr3:36737678 Csa04g00521 Csa-Chr4:3413043 9.58E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83