Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04197 ATGAGGAAACTCTGTCCTAATTTCGACAAAGAAAATGGCCTCGAAACCGTTCTTGAAGTCCCCATTCCTGAAGAAATGTTCACCAACATGGGCACCAACGCCGCTCTCCGTTGGCAAAATCTCCGTGCCTTAATGAAAGCTCAATCCACCGCCGATTCTCTCAACAAATCTTCCTCTCATCTCTCCGCTGCTTCCAATAACGAATTCATGGCTCTTCTCAAACTCGTAGGATCTCCATTAATCCCTTTCCAAGTCCATCTCGACCTCACCTTCAATTGCTCTTTGCGTGATTATTCCATCGAGGCGTCGACGGCGAAGTATATTGTGCAGCAATATGTGGCGGCGACGGGAGGACAAGCGGCGTTGAACTCAGTGAATAGTATGTATGCGGTTGGACAAGTGAAAATGGTGGGATCGGCGATGCAACAAGGGGAAGATAGTGTACAGGCGAGGGGGAAATGTGAGGTTGGGGGATTTGTGTTGTGGCAGAAGAATCCAGACCTTTGGTACCTTGAGCTTGTGGTGTCTGGTTATAAGGTTAGTGCCGGAAGCAACGGCAAGGTGGCTTGGAATCAGTCTTCTTCGCAGCCTTGTCATGCTAATAAAGGTCCTCCCAGACCTCTCCGCCGCTTCTTTCAGGGATTAGACCCACGGTACACAGCGAATTTGTTCGAAGACGCCGTATGCATTGGAGAGAAAACCATAAGCAAAGAAGACTGTTTCATTCTAAAACTAGAGACGGCAGCAGAATTGCTTAAATCACAAAGCACGCCCCACGTCGAGATCATTCACCACACAATTTGGGGTTACTTCAGCCAGAGAACCGGCCTCCTTGTCCAATTTGAGGACACCAAGCTCGTCAGAATGAAAGCTGGCAAGCGAAACGACAGTGTTTTTTGGGAGACCAGCATTGCTTCCACCATCGAGGATTATCGATACGTCGACAACATTAACATTGCGCATGGTGGTCGGACGACGGCCAGGCTGCATCGGTACGGTGAAACGCTGAACCACCGGAGGAAAATAGAGGAGAGTTGGAGAATTGAAGAGGTTGATTTTAATATTTGTGGTTTGTCGATGGATTGCTTCTTGCCTCCAGCGGATATGAAGAGGGATCCATCCGACGTCGGAGAACAAGAGGCGGGAGAGAGCTAA 1155 48.92 MRKLCPNFDKENGLETVLEVPIPEEMFTNMGTNAALRWQNLRALMKAQSTADSLNKSSSHLSAASNNEFMALLKLVGSPLIPFQVHLDLTFNCSLRDYSIEASTAKYIVQQYVAATGGQAALNSVNSMYAVGQVKMVGSAMQQGEDSVQARGKCEVGGFVLWQKNPDLWYLELVVSGYKVSAGSNGKVAWNQSSSQPCHANKGPPRPLRRFFQGLDPRYTANLFEDAVCIGEKTISKEDCFILKLETAAELLKSQSTPHVEIIHHTIWGYFSQRTGLLVQFEDTKLVRMKAGKRNDSVFWETSIASTIEDYRYVDNINIAHGGRTTARLHRYGETLNHRRKIEESWRIEEVDFNICGLSMDCFLPPADMKRDPSDVGEQEAGES* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36818412 36820458 + CsaV3_3G045030.1 Csa03g04197 525102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04197 384 PANTHER LIPASE 1 372 IPR006873 -
Csa03g04197 384 PANTHER DUF620 FAMILY PROTEIN (DUF620) 1 372 - -
Csa03g04197 384 Pfam Protein of unknown function (DUF620) 128 366 IPR006873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04197 - - - csv:101210043 780.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04197 Csa-Chr3:36818412 Csa04g00051 Csa-Chr4:286688 2.42E-104 dispersed
Csa06g00155 Csa-Chr6:1012669 Csa03g04197 Csa-Chr3:36818412 5.41E-152 transposed
Csa03g04197 Csa-Chr3:36818412 Csa06g03228 Csa-Chr6:27297793 2.18E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g927 Blo01g01557 . . . Bpe02g00398 . . Bma01g02313 . . Cma01g01899 . Car01g01482 . . . . . . . . . . . . . . . . . . . Cone7ag1817 . . . Csa03g04197 Chy04g00522 . . . . . . . . . Sed13g1633 Cmo01g01963 . . . . . . Cpe02g00135 Bhi09g02158 Tan01g4952 Cmetu04g2517 . Hepe01g1669 Mch11g0172 . Cla05g01952 Cam05g2098 Cec05g2107 Cco05g2163 Clacu05g2090 Cmu05g1966 Cre05g2084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012139 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 2 1 30