Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04203 ATGGAACATTATTATGAAACTCAAGCAAATGGAGAAGCATCTGGTCATGATTTCCAAAACTGCGGATACTCTTCTTATTCATTATCTAACATTCAAATGTCATCACCCTCGTTTGATTTAAGAGTCTTCTACATTAGGTTCAGTAACTTCCAAGTGGACGATTTGACCCCCGAGTTTCTCACTTTGAATCAATTCCCTCTAATGCCAAATACCCATTTGGATGTTAATGGTGTTAAAAGCAGCAATTACTCTGAAGGCTTTTCTTCACTTCTCAAGAGAGACAGAGTCAACAAGAACTCGGAAGAAGCAACATTTGTGAGCACTCATACCATTAGGTTAAAGAGGGGTTTGAAGTTTGAGGTTTTCAATGGAAATTATCAAATTCTATCTGGGGAATTGTCTCATACGGGGTGCACTGGAAAATCAAAGAGCAATTCTAAGAAAAGATGGAGCATGAACTGTGAATCTGGTGCTGTTTCCGATGCTGCGTTTTTTAAGGGAAAGCTCATTCCAGGACAGGCGTTGATTAGTCCAACAATTGAGGTATACATTGCTGGTAGCTTTTCTGGAAACCCTATTGTCTTAACGAAAACTCTGCAACTCAACTTTTGGAAGAAGCACAGTCATAAACGGATGTTGGATTCAATACCAGAGCATGATACTACTGAATGCGACGAAGATTCATATCCTGTATATGATTCACAAGTATCAAAGTACAGAAATTATGGAGAAGAAAATGAAGATGACTATGGCAACATGTACTGGGGAACCGACTACATGGAGAGAGAAGATGGCGAACTATCCTGGTTCAACTCAGGTGTGAGAGTTGGAGTAGGAATTGGACTTGGTATTTGCTTGGGAATTGGTGTGGGAGTTGGCTTGCTCGTGCGTACTTACCAGGCAACTAGTCGAACCCTGAAAAGGCAGCTTATGTGA 936 40.6 MEHYYETQANGEASGHDFQNCGYSSYSLSNIQMSSPSFDLRVFYIRFSNFQVDDLTPEFLTLNQFPLMPNTHLDVNGVKSSNYSEGFSSLLKRDRVNKNSEEATFVSTHTIRLKRGLKFEVFNGNYQILSGELSHTGCTGKSKSNSKKRWSMNCESGAVSDAAFFKGKLIPGQALISPTIEVYIAGSFSGNPIVLTKTLQLNFWKKHSHKRMLDSIPEHDTTECDEDSYPVYDSQVSKYRNYGEENEDDYGNMYWGTDYMEREDGELSWFNSGVRVGVGIGLGICLGIGVGVGLLVRTYQATSRTLKRQLM* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36865869 36867461 - CsaV3_3G045090.1 Csa03g04203 525108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04203 311 PANTHER - 1 310 - -
Csa03g04203 311 PANTHER FORMATE DEHYDROGENASE 1 1 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04203 - - - csv:101203504 604.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02046 Csa03g04203 CCT
Csa02g02046 Csa03g04203 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00864 Csa-Chr3:7258489 Csa03g04203 Csa-Chr3:36865869 7.92E-60 dispersed
Csa03g04203 Csa-Chr3:36865869 Csa05g00172 Csa-Chr5:994240 6.82E-08 dispersed
Csa02g02046 Csa-Chr2:18809154 Csa03g04203 Csa-Chr3:36865869 2.14E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g937 . . Bda01g00532 . Bpe02g00394 . . Bma01g02318 . . Cma01g01906 . Car01g01488 Car12g00450 . . Cpe07g00428 Bhi04g00251 Tan02g1953 . . Hepe10g0649 . Lcy13g1992 Cla08g01495 Cam08g1984 Cec08g1559 Cco08g1696 Clacu08g1674 . Cre08g1457 . . . . Lsi04g01658 Csa03g04203 Chy04g00515 Cme03g01962 Blo17g00804 . Bda08g01289 . . Bpe05g00085 . Bma05g00115 . Cmo01g01969 . . . Car05g00196 . Cpe11g00195 Cpe02g00130 . . . . . . . Cla05g01945 Cam05g2088 Cec05g2101 Cco05g2155 Clacu05g2083 Cmu05g1959 Cre05g2078 Lsi08g01400 Csa02g02046 Chy03g01467 Cme04g00573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014224 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 1 1 1 1 23