Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04225 ATGCCTCTGAGAGGCATAATTGGTGAGAAGACTGAAATACGTGAAAGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCCTCATCTTCTCCGGTTCCGGTTGAACAGAGCCGTTGGGCGAATTTACCTCCGGAGCTTCTTTTGGACGTAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGTAGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTTAGGACTCCTGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCTCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATTCGACGAGCAATGAGTACAGAGTTCAGTATATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGTTGAGATCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCGAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAGCAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACGAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTATTGCGTCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACGGAGTTTAAAGACTGTATCGATGAGTATCATCCCTCAACACCCCTTTTGAAAGGAAAGAAGGCAATAACCGAGTCCCCAACCGAGTCCCCCGACTCTCAAGAATCGGTAGCTCCATTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCGTCAGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCGGCTGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.84 MPLRGIIGEKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSSPVPVEQSRWANLPPELLLDVIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFSISLVPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPANYKVAAVAYELNVLRTRGPRRMRCTMHSIPIASVEEGGTAPTPTEFKDCIDEYHPSTPLLKGKKAITESPTESPDSQESVAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36997702 37004561 - CsaV3_3G045310.1 Csa03g04225 525130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04225 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Csa03g04225 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Csa03g04225 411 SUPERFAMILY F-box domain 43 100 IPR036047 GO:0005515
Csa03g04225 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Csa03g04225 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Csa03g04225 411 MobiDBLite consensus disorder prediction 8 32 - -
Csa03g04225 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Csa03g04225 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Csa03g04225 411 MobiDBLite consensus disorder prediction 39 53 - -
Csa03g04225 411 Gene3D - 52 105 - -
Csa03g04225 411 PANTHER TUBBY-RELATED 1 411 - -
Csa03g04225 411 MobiDBLite consensus disorder prediction 1 53 - -
Csa03g04225 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
Csa03g04225 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Csa03g04225 411 Pfam Tub family 118 406 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04225 Csa-Chr3:36997702 Csa06g00572 Csa-Chr6:4906059 6.53E-155 dispersed
Csa03g04225 Csa-Chr3:36997702 Csa04g00567 Csa-Chr4:3753112 0 wgd
Csa03g04225 Csa-Chr3:36997702 Csa06g03246 Csa-Chr6:27387767 1.10E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31413 PF01167 Tub 3.90E-105 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04225 K19600 - csv:101222500 823.928