Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04233 ATGGAAGTTGCACAAATTCTGTGCATGAACAAAGGAGGGGGAGAAACGAGTTACGCTCGAAACTCATCTCTTCAAAGCAAAATCATATCCGATTCAAAGCGAATCACTGAAGAAGCAGTTGAATCCCTGATAATCACTTTCTCCAATAACAACGACACAACCAGCGTTATTTCTATTGCTGATTTGGGCTGCTCATCTGGGCCCAACACATTACTTCTAGTCTCCGATACGCTCAATCTTATCTACTCTAAATGCAAACGCCTCACCTACCCACTACCCGAAGTTCAGGTTTTCCTCAACGATCTCTTCAGCAATGACTTCAACTACATATTTGGGTCGCTCCCCGAGTTCCATCGACGTCTTGTGGTCGAGAACGGTGGGGAAGTCGGGCCTTGTTTTATATCCGGGGTGCCGGGGACTTTTTATGGAAGGTTGTTTCCAAAAAAGAGCTTGAATTTTGTACATTCTTCATCTAGTTTGCATTGGCTTTCGACGGTTCCAGAAGGATTATTGGAAGGGGAAGAGAAAAGAAGGATGAATAAAGGGAAGCTTTATATATCTCCAACGAGTCCGAGGAGTGTGTTGGAGGCTTATGGTAGACAGTTTAAAAGTGACTTTTGGAAGTTTATAAAATCGAGATCTGAAGAAATGGTTAGTGGTGGGAGAATGGTTTTATCTCTTATGGGGAGGAAATCTATAGATCCTACGACTCCTGATAGTTGTCATCATTGGGAGCTCTTGGCTCAGGCTTTAACCACCTTGGCTTCTCAGGGATTAGTTGAAGAGAACAAAATAGACTCATTTAACGCACCATACTATGCGCCATGCATGGAAGAAGTGAAGGAAGAGATAGAGAAAGAAGGTTCATTCATGATAGAACGGTTCGAAGCATTCGAGGTTGAATGGGATGGGTTTGCCAGTGAGGATGAGAATGGCCTCAAAATTCTAACCAGAGGCCAACGAGTGGCTAAGACAATAAGAGCAGTGGTTGAAACCATGTTGGAGTCTCATTTTGGTGGCCATATTATGGATGCTTTGTTTCAACATTATGGGACCATTGTTCAACATTATTTGTCTAACAATAGAACTAAGTATACCAATTTGGTTGTTTCTTTTGTAAAGAAATAA 1128 42.11 MEVAQILCMNKGGGETSYARNSSLQSKIISDSKRITEEAVESLIITFSNNNDTTSVISIADLGCSSGPNTLLLVSDTLNLIYSKCKRLTYPLPEVQVFLNDLFSNDFNYIFGSLPEFHRRLVVENGGEVGPCFISGVPGTFYGRLFPKKSLNFVHSSSSLHWLSTVPEGLLEGEEKRRMNKGKLYISPTSPRSVLEAYGRQFKSDFWKFIKSRSEEMVSGGRMVLSLMGRKSIDPTTPDSCHHWELLAQALTTLASQGLVEENKIDSFNAPYYAPCMEEVKEEIEKEGSFMIERFEAFEVEWDGFASEDENGLKILTRGQRVAKTIRAVVETMLESHFGGHIMDALFQHYGTIVQHYLSNNRTKYTNLVVSFVKK* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37062534 37064406 - CsaV3_3G045390.1 Csa03g04233 525138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04233 375 Pfam SAM dependent carboxyl methyltransferase 49 373 IPR005299 GO:0008168
Csa03g04233 375 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 3 372 - -
Csa03g04233 375 Gene3D Vaccinia Virus protein VP39 21 362 IPR029063 -
Csa03g04233 375 Gene3D - 6 361 IPR042086 -
Csa03g04233 375 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 3 372 IPR005299 GO:0008168
Csa03g04233 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 375 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04233 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - csv:101220850 745.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04233 Csa-Chr3:37062534 Csa06g03266 Csa-Chr6:27482065 2.28E-116 dispersed
Csa03g00068 Csa-Chr3:572314 Csa03g04233 Csa-Chr3:37062534 6.74E-95 transposed
Csa03g04233 Csa-Chr3:37062534 Csa04g00554 Csa-Chr4:3683812 1.29E-90 wgd
Csa03g04233 Csa-Chr3:37062534 Csa06g03261 Csa-Chr6:27448277 2.06E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g980 Blo01g01575 Blo12g00902 . . . . . . . . Cma01g01923 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01693 Csa03g04233 . . . . . . . . . . . Cmo01g01986 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218