Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04238 ATGGAGTCTACTGCTAATCTCAATCACCACCAGCATCAGCTTCAAGATCACCAGCTGCTTCTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTTGTCCATTGTTCCTTCTTATTTTGGCCTTGGAACTGCCTGGTCTTCTAATATCTCTCTGAATAACAATAATACTTGCAACGTCTACGATAACCCAACAATATTCAATGGAGAAGTAACAACAACTAATTCTTCACATCCAATTAGATCATCAGACTGTAGTAATAATTTTTTCACTCAATCTCTCCATCATAGCCAACAACAAATCTCCTCCACACCTCCAACAACTCCCCCTCCTCCTCCTCCTCATCATCAATCTTTCCCTAAATTCACAGAAATCTTGAACAACAACAACAACATTACAAATCTTCAAGATTTCATCAATATTAATAACAACAACGATTCCGATCTCAATGACCTCACTCACAAGCTCTTGATCAAAACCCTCATTTCATCCGGCTGTCAAATCAACGGTACTGATCACCCCATCATTTCAAGATCAAGTAATAATAATAGACCTCCCCATTTCCCTCAAATTTACCCTAGCATTAATGTCTCTAATTGGAACCTCTCGTCGCAACCCCCACCGCCACCTTCGTTCTCAAATTCCTTAGATTTGAACTTACAAACGCCCGCCGATATGTTGGTTGGAAGTTTCAGGCAGGATAATTTCGGTATTTTTAAAGAAACAGTCTCCGATTTTCACGACCAGATTCAAGAATCTCCGCCGACGGGCACTCTCCCATGCATTATTCCAAGTAAAATGACAACATATAGCAGTGCTGAAGAATGTAAACCAAAACGAGGTTGTAATTCCATGGAGTCAAGGTTGAATCAACAATCTCCTCCTCTTAAGAAATCACGATTGGATTCACGCGCTTCTTGCCCACCATTTAAGGTTAGAAAGGAGAAATTGGGTGATAGAATTGCAGCACTTCAACAATTGGTTGCACCCTTTGGCAAGACAGACACAGCATCTGTGTTAATGGAAGCCATTGGTTACATCAAATTCCTTCAAAATCAGGTTGAGACATTGAGCGTTCCATACATGAAGCCCGCCGGCGGCAACAAAGCCACTCAGCCCACACATCGGAGTTCGGTGGAGGACGGAAATGAAGGAGGGCAAAATCGAGATCTCAGAAGTAGAGGGCTGTGTTTGGTTCCATTGGGGTGCTTGTCATACGTGACCGGCGACAGCGGCGGTGGCGTCGGAATTTGGCCGCCACCAGGGTTTAATGGAGGAACTTCTTAA 1290 43.02 MESTANLNHHQHQLQDHQLLLASSSSSSSSSSSLSIVPSYFGLGTAWSSNISLNNNNTCNVYDNPTIFNGEVTTTNSSHPIRSSDCSNNFFTQSLHHSQQQISSTPPTTPPPPPPHHQSFPKFTEILNNNNNITNLQDFININNNNDSDLNDLTHKLLIKTLISSGCQINGTDHPIISRSSNNNRPPHFPQIYPSINVSNWNLSSQPPPPPSFSNSLDLNLQTPADMLVGSFRQDNFGIFKETVSDFHDQIQESPPTGTLPCIIPSKMTTYSSAEECKPKRGCNSMESRLNQQSPPLKKSRLDSRASCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKPAGGNKATQPTHRSSVEDGNEGGQNRDLRSRGLCLVPLGCLSYVTGDSGGGVGIWPPPGFNGGTS* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37108680 37112535 - CsaV3_3G045440.1 Csa03g04238 525143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04238 429 PANTHER OS01G0105700 PROTEIN 130 411 - -
Csa03g04238 429 MobiDBLite consensus disorder prediction 105 119 - -
Csa03g04238 429 MobiDBLite consensus disorder prediction 280 305 - -
Csa03g04238 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Csa03g04238 429 MobiDBLite consensus disorder prediction 285 300 - -
Csa03g04238 429 MobiDBLite consensus disorder prediction 95 122 - -
Csa03g04238 429 CDD bHLH_AtbHLH_like 309 359 IPR045239 -
Csa03g04238 429 Gene3D - 312 363 IPR036638 GO:0046983
Csa03g04238 429 MobiDBLite consensus disorder prediction 365 391 - -
Csa03g04238 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 130 411 - -
Csa03g04238 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 363 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04238 - - - csv:101205604 743.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02076 Csa03g04238 CCT
Csa02g02076 Csa03g04238 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00554 Csa-Chr3:4716554 Csa03g04238 Csa-Chr3:37108680 2.71E-33 dispersed
Csa03g04238 Csa-Chr3:37108680 Csa06g03565 Csa-Chr6:28902722 6.96E-33 dispersed
Csa07g00710 Csa-Chr7:5057906 Csa03g04238 Csa-Chr3:37108680 5.88E-26 dispersed
Csa05g01819 Csa-Chr5:21538651 Csa03g04238 Csa-Chr3:37108680 6.91E-16 transposed
Csa02g02076 Csa-Chr2:18953613 Csa03g04238 Csa-Chr3:37108680 3.09E-45 wgd
Csa03g04238 Csa-Chr3:37108680 Csa06g03280 Csa-Chr6:27537459 2.02E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g990 . . . . . . . . . Cmo12g00398 Cma01g01931 Cma09g00137 Car01g01507 Car12g00423 . Cpe06g00096 Cpe07g00402 . . . . . . . Cla08g01466 Cam08g1954 Cec08g1529 Cco08g1667 Clacu08g1644 . Cre08g1429 . . . Cone20ag0124 Lsi04g01698 Csa03g04238 Chy04g00477 Cme03g01932 . Blo18g00805 . Bda01g01505 Bpe02g01703 . . . . Cmo01g01994 Cmo09g00133 Cma12g00448 . . Car09g00123 . Cpe02g00107 . . . . . . . Cla05g01913 Cam05g2051 Cec05g2062 Cco05g2115 Clacu05g2046 Cmu05g1922 Cre05g2045 Lsi08g01375 Csa02g02076 Chy03g01437 Cme04g00527
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004725 1 4 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 2 1 42