Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04248 ATGGTATCAGTTCTTTCTCTTCCATCTTCTTCCTCGTATTTTGTTCATGACAGGAGTTTCTCCTTTAGCTTCTTCCCCAAGAGGTGTTGCCAAAACAGAGGTTTCCCTGGTAATTCGAGCTACTGCACAATTAAGTGCAAATTAGCTAGGGTCGTGGATTCTTCCGCTAACCCAGCTACATTGACAAAGGAAGCTCACAAGTATTTTGATCAGGCTATTATAACAGTTCGTTCAGGAGATGGAGGCCATGGTACAGTTCTTAGCATGCCTAATCAACAAACGAGCAAGTCCCAAGGAAGAAATGGGAAGGAGAAGGAGAAGGCGAAGAAGAAAAGTTTGTACAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGACGTGGTAATTTATGCCGATGAGGGGAAAGACTCGCTGCTGGAGTTTCATACCAAAAGCCGGTATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCATAATGGATTTGCTGCCCCTACTCTGCGTATTCCGGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTTCATCCAGGCGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCCTGATTGATACACCGGAGAACAGAAAGAAAAAGATGATGTCCCTGACCTCCAATGTCATGAGAGATGAAAGTGATAAGGTCCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTTCGAGTAGTTGCCGATGTCGGTCTGGTGGGACTTCCCAATGCTGGAAAATCAACACTTCTTGCAGCCATTACGCTTGCAAAACCTGATATTGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGCGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCTGATTTACCAGGTCTTATAGAGGGTGCTCATTTGGGTAAGGGCCTTGGTCGCAACTTTCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTTGATGCAGCTGCACAGAACCCTGTCGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTATCTTGGAAGACCATACGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAAGAATAGGCTTCCATCTGTAACTGAAGAAATCTTGAGAATTGGAACTGACGATCGCTATCCTGAGCAAATGGGATCTGAAAACAGTGTACAATCTTCAGTTCTAGAAGACGATCTTGCAACAGTTCCGTCTTTGGAAATTCCAGTTGCTGATGAAAAGGATAAAGAGATTGAAGACTATCCTCGTCCTCTTTCAGTCGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTTAATGTTGAAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCTGATGGCATGTCGATGAATTCAGGTGGTTAA 1512 44.18 MVSVLSLPSSSSYFVHDRSFSFSFFPKRCCQNRGFPGNSSYCTIKCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGRNGKEKEKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPENRKKKMMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAQNPVDDYRTVREELRMYNPNYLGRPYVVVLNKIDLPEAKNRLPSVTEEILRIGTDDRYPEQMGSENSVQSSVLEDDLATVPSLEIPVADEKDKEIEDYPRPLSVVGVSVLKGINISLMLKEIRAALRKCRDSDGMSMNSGG* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37200341 37204983 + CsaV3_3G045540.1 Csa03g04248 525153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04248 503 PRINTS GTP1/OBG GTP-binding protein family signature 268 288 IPR006073 GO:0005525
Csa03g04248 503 PRINTS GTP1/OBG GTP-binding protein family signature 289 307 IPR006073 GO:0005525
Csa03g04248 503 PRINTS GTP1/OBG GTP-binding protein family signature 324 339 IPR006073 GO:0005525
Csa03g04248 503 PRINTS GTP1/OBG GTP-binding protein family signature 341 359 IPR006073 GO:0005525
Csa03g04248 503 CDD Obg 266 404 IPR031167 GO:0005525
Csa03g04248 503 ProSitePatterns GTP1/OBG family signature. 326 339 IPR006074 GO:0005525
Csa03g04248 503 ProSiteProfiles Obg domain profile. 66 265 IPR006169 -
Csa03g04248 503 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 43 495 IPR045086 GO:0003924|GO:0005525
Csa03g04248 503 Pfam GTP1/OBG 127 263 IPR006169 -
Csa03g04248 503 SUPERFAMILY Obg GTP-binding protein N-terminal domain 68 229 IPR036726 -
Csa03g04248 503 MobiDBLite consensus disorder prediction 83 111 - -
Csa03g04248 503 Gene3D GTP1/OBG domain 67 264 IPR036726 -
Csa03g04248 503 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 43 495 - -
Csa03g04248 503 Gene3D - 265 497 IPR027417 -
Csa03g04248 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 488 IPR027417 -
Csa03g04248 503 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 266 489 IPR031167 GO:0005525
Csa03g04248 503 Pfam 50S ribosome-binding GTPase 267 394 IPR006073 GO:0005525
Csa03g04248 503 TIGRFAM small_GTP: small GTP-binding protein domain 267 423 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04248 - - - csv:101218721 964.526
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01431 Csa-Chr3:10711413 Csa03g04248 Csa-Chr3:37200341 1.96E-52 dispersed
Csa03g04248 Csa-Chr3:37200341 Csa05g02844 Csa-Chr5:28826700 1.08E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31