Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04249 | ATGGATAGAAAGTCCAGAACTAATAACAACGTTGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCAGACAACGCTGCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAACCCAACCGTGGTGCTCGTCTCTGGCTTGGCACCTTCGACACTGCCCATGAAGCCGCTCTTGCTTACGATGCTGCTGCTCGTAAACTCTACGGCTCCGAAGCTAAGCTTAATCTCCCCCAAACTACTACTACTTCTCATGAATTACCTCAATTGGAACATGGCGGCCAATCTCCTTCTAATAATAATATTATTGCTTCTCCCTCTCCAACCGGTACGACAACAACGGTGTCCTCATCTCCGATTGAGCGGATTGGCGGGCTGTGGGAAAATGAGAACGTGAATTTTGATGAGTCAATATGGAGAGAGGCTGTGATGTCTTTAGATTTTCCTATTATCGAAAATGATCAAGGGATTTTCTTCGACGGGGCTGGAAGTTGGGACGCTTTGCAGTGGTGCATATATTAA | 558 | 48.92 | MDRKSRTNNNVAQASSRKGCMRGKGGPDNAACTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTSHELPQLEHGGQSPSNNNIIASPSPTGTTTTVSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIENDQGIFFDGAGSWDALQWCIY* | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 37209320 | 37215046 | + | CsaV3_3G045550.1 | Csa03g04249 | 525154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04249 | 185 | Pfam | AP2 domain | 33 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | MobiDBLite | consensus disorder prediction | 99 | 129 | - | - | |
Csa03g04249 | 185 | Gene3D | AP2/ERF domain | 33 | 92 | IPR036955 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 131 | - | - | |
Csa03g04249 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 133 | 182 | - | - | |
Csa03g04249 | 185 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Csa03g04249 | 185 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 9 | 131 | - | - | |
Csa03g04249 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 133 | 182 | - | - | |
Csa03g04249 | 185 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g04249 | 185 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04249 | Csa-Chr3:37209320 | Csa04g01662 | Csa-Chr4:15924998 | 3.46E-33 | dispersed | |
Csa02g02097 | Csa-Chr2:19060771 | Csa03g04249 | Csa-Chr3:37209320 | 1.70E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31416 | PF00847 | AP2 | 2.30E-15 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04249 | - | - | csv:101204876 | 357.836 |