Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04249 ATGGATAGAAAGTCCAGAACTAATAACAACGTTGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCAGACAACGCTGCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAACCCAACCGTGGTGCTCGTCTCTGGCTTGGCACCTTCGACACTGCCCATGAAGCCGCTCTTGCTTACGATGCTGCTGCTCGTAAACTCTACGGCTCCGAAGCTAAGCTTAATCTCCCCCAAACTACTACTACTTCTCATGAATTACCTCAATTGGAACATGGCGGCCAATCTCCTTCTAATAATAATATTATTGCTTCTCCCTCTCCAACCGGTACGACAACAACGGTGTCCTCATCTCCGATTGAGCGGATTGGCGGGCTGTGGGAAAATGAGAACGTGAATTTTGATGAGTCAATATGGAGAGAGGCTGTGATGTCTTTAGATTTTCCTATTATCGAAAATGATCAAGGGATTTTCTTCGACGGGGCTGGAAGTTGGGACGCTTTGCAGTGGTGCATATATTAA 558 48.92 MDRKSRTNNNVAQASSRKGCMRGKGGPDNAACTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTSHELPQLEHGGQSPSNNNIIASPSPTGTTTTVSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIENDQGIFFDGAGSWDALQWCIY* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37209320 37215046 + CsaV3_3G045550.1 Csa03g04249 525154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04249 185 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 MobiDBLite consensus disorder prediction 99 129 - -
Csa03g04249 185 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Csa03g04249 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 131 - -
Csa03g04249 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 133 182 - -
Csa03g04249 185 MobiDBLite consensus disorder prediction 1 26 - -
Csa03g04249 185 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 131 - -
Csa03g04249 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 133 182 - -
Csa03g04249 185 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Csa03g04249 185 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04249 Csa-Chr3:37209320 Csa04g01662 Csa-Chr4:15924998 3.46E-33 dispersed
Csa02g02097 Csa-Chr2:19060771 Csa03g04249 Csa-Chr3:37209320 1.70E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31416 PF00847 AP2 2.30E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04249 - - csv:101204876 357.836