Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04250 ATGGCTGATCATGGAGGAGGCTCAGTTTCTGGGTCGTCAAGATTTTGGTGTTCAATTCCTGAGAAACTTCAACTCCATGGCGCCATGTTGGCCTTGCAATTCGGCTATGCTGGATTTCACGTTGTCTCAAGAGCTGCCCTTAATATGGGCATTAGTAAACTTGTGTTCCTTGTTTATAGGAACATCATTGCCTTTTTCCTTCTCCTTCCCTTTGCCTATTTCCTCGAAAAGAAGGAACGTCCTCCCATTTCTTTCAATTTTCTTCTTCAGTTCTTCCTTCTTGCCCTTGTTGGAATCACGGCAAACCAAGGATTCTACTTGCTAGGTTTGGAGAACACGTCACCGACGTTTGCTTCAGCGATACAAAACTCAGTTCCAGCCATAACATTCCTCATGGCTGCATTACTCCGAATAGAACAAGTGAGACTAAACAGAAAAGATGGTATAGCAAAAGTGCTGGGAACAATATGCTGTGTAGCTGGGGCCACAGTGATCACTCTTTACAAAGGTCCAACAATATACAGCCCAACTCCTTCACTACAAATTGCACCCATCACCACCGCACCCATTTTCGCTTCACTTGGGGACGCATCCGGGAAAAGCTGGACCCTTGGCTGCGTCTTTTTGATCGGTCATTGTTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCACCCGTCTTGAAAAAATACCCAGCTCGTCTCTCTGTCACTTCCTACACTTGTTTCTTTGGGATAATCCAATTTGTCATCATCGCTGCCATTGCGGAGCGTGATGCTCAGGCTTGGCTCTTTCACTCTGGTGGTGAAATTTTTAGCGTCCTGTATGCGGGAGTGGTAGCGTCGGGAATTGCTTTTGCTGTACAGATATGGTGTATTCAAAGGGGTGGGCCGGTGTTCGTTGCGGTTTATCAACCAGTTCAGACATTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAACAGTTCTTCTTGGGAGGGATCATTGGAGCGGTATTGATCATCGCCGGTTTATACTTCGTTCTTTGGGGGAAAAGCGAAGAGAGGAAATTTGCACTTGAGAAGGCTGCCATCCTCTCTGCTCCCGACCACAGTGGTAACAATAGAACACCTCCACACATCATCAAGCCCTCCTCCATTACTCAGCCACTTCTCATCCATTCTTCAAACGACAGCAACGTTTGA 1185 46.92 MADHGGGSVSGSSRFWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFFLLLPFAYFLEKKERPPISFNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVLGTICCVAGATVITLYKGPTIYSPTPSLQIAPITTAPIFASLGDASGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFVIIAAIAERDAQAWLFHSGGEIFSVLYAGVVASGIAFAVQIWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEQFFLGGIIGAVLIIAGLYFVLWGKSEERKFALEKAAILSAPDHSGNNRTPPHIIKPSSITQPLLIHSSNDSNV* 395
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 37232371 37236281 + CsaV3_3G045560.1 Csa03g04250 525155
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04250 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 59 169 - -
Csa03g04250 394 PANTHER WAT1-RELATED PROTEIN 16 364 - -
Csa03g04250 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 347 - -
Csa03g04250 394 PANTHER WAT1-RELATED PROTEIN 16 364 IPR030184 GO:0016021|GO:0022857
Csa03g04250 394 Pfam EamA-like transporter family 30 166 IPR000620 GO:0016020|GO:0016021
Csa03g04250 394 Pfam EamA-like transporter family 204 342 IPR000620 GO:0016020|GO:0016021
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa02g02098 Csa03g04250 CCT
Csa02g02098 Csa03g04250 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00409 Csa-Chr1:2564011 Csa03g04250 Csa-Chr3:37232371 6.24E-136 dispersed
Csa03g04250 Csa-Chr3:37232371 Csa03g03689 Csa-Chr3:32827816 4.50E-81 dispersed
Csa02g02098 Csa-Chr2:19067121 Csa03g04250 Csa-Chr3:37232371 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04250 - - csv:101218486 753.821