Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04251 | ATGACGGAGTTGTTCTATTTAGATCGGAAGCAAGAAGATGATCCAGAAAATCAAAGAGCAAGATCAGAACAACAGTTGTTTTTGTATAATAGTAGATCAAACAATCCACAACAGATCTGCTCCAAAGAATTCCAGATATGGCCGCAGTACTATTCTCATCACAACCAACATCCTCCACACCAAAATGTCGAGAATTACATTTCCTTTGGTGTGGGGCCTAGTAGAAGATCCAGCTTGATGATCAACGCTTTTGATCATGACTTTGTTTCGAGATCAGGGTTTACGATGACGAAACATAGCGGCGGAGGAAGTGGCGGTGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAGGATTGTTCCCATTTGAGATGTAGGACTTGTTGCAAGAGTCGAGGGTTTCATTGTCAAACTCATGTCAAAAGTACTTGGGTTCCAGCTGCTAAACGTCGTGAACGACAACAGCAACGTCATCAACAATCGTCAGATCAGACTGTTCCCAAAATTCATAGAGAAAATCCACCGTCTCTCACTGTTACTACCACTTCAGGGTTAGAACATGGAAACTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTTCGATGCGTCAAAGTTAGCGCAATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCAGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCAGAATACAGCCAAAATTTGAGCACAGGCGGTGACGGAGAAGATGGTGGGGAAGGGCTAGATTTGGTGATCGGAGCATCAAACGGTAGTGGGAGAGTTAATAACCAATCCACCCCATTTGTGGAATCTTCATTGTATCCCATCCCAATCAACTCATTCAACAACGTACTGTTTGTGCGGCTGAAGCGGCGCTTAGAAAAAGGAAAAAAACAAAAAGAGAGAGAGAGATTAGTGAAATTTTTGTTGGTGTGGAACTCGAAGTTGCTTTACGCAGTTTAA | 990 | 42.02 | MTELFYLDRKQEDDPENQRARSEQQLFLYNSRSNNPQQICSKEFQIWPQYYSHHNQHPPHQNVENYISFGVGPSRRSSLMINAFDHDFVSRSGFTMTKHSGGGSGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQSSDQTVPKIHRENPPSLTVTTTSGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEYSQNLSTGGDGEDGGEGLDLVIGASNGSGRVNNQSTPFVESSLYPIPINSFNNVLFVRLKRRLEKGKKQKERERLVKFLLVWNSKLLYAV* | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 37243313 | 37245247 | - | CsaV3_3G045570.1 | Csa03g04251 | 525156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04251 | 329 | Pfam | Domain of unknown function (DUF702) | 107 | 239 | - | - | |
Csa03g04251 | 329 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa03g04251 | 329 | MobiDBLite | consensus disorder prediction | 148 | 185 | - | - | |
Csa03g04251 | 329 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 291 | - | - | |
Csa03g04251 | 329 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa03g04251 | 329 | MobiDBLite | consensus disorder prediction | 160 | 185 | - | - | |
Csa03g04251 | 329 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 191 | 238 | IPR006511 | - | |
Csa03g04251 | 329 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 109 | 151 | IPR006510 | - | |
Csa03g04251 | 329 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 291 | IPR007818 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g02103 | Csa03g04251 | CCT | |
Csa02g02103 | Csa03g04251 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04251 | Csa-Chr3:37243313 | Csa05g02859 | Csa-Chr5:28935755 | 9.45E-35 | dispersed | |
Csa07g00507 | Csa-Chr7:3658819 | Csa03g04251 | Csa-Chr3:37243313 | 4.57E-106 | transposed | |
Csa02g02103 | Csa-Chr2:19139683 | Csa03g04251 | Csa-Chr3:37243313 | 3.02E-54 | wgd | |
Csa03g04251 | Csa-Chr3:37243313 | Csa04g00536 | Csa-Chr4:3546817 | 5.90E-51 | wgd | |
Csa03g04251 | Csa-Chr3:37243313 | Csa06g03294 | Csa-Chr6:27622500 | 2.12E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31417 | PF05142 | DUF702 | 6.10E-56 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04251 | - | - | csv:101218246 | 583.563 |