Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04251 ATGACGGAGTTGTTCTATTTAGATCGGAAGCAAGAAGATGATCCAGAAAATCAAAGAGCAAGATCAGAACAACAGTTGTTTTTGTATAATAGTAGATCAAACAATCCACAACAGATCTGCTCCAAAGAATTCCAGATATGGCCGCAGTACTATTCTCATCACAACCAACATCCTCCACACCAAAATGTCGAGAATTACATTTCCTTTGGTGTGGGGCCTAGTAGAAGATCCAGCTTGATGATCAACGCTTTTGATCATGACTTTGTTTCGAGATCAGGGTTTACGATGACGAAACATAGCGGCGGAGGAAGTGGCGGTGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAGGATTGTTCCCATTTGAGATGTAGGACTTGTTGCAAGAGTCGAGGGTTTCATTGTCAAACTCATGTCAAAAGTACTTGGGTTCCAGCTGCTAAACGTCGTGAACGACAACAGCAACGTCATCAACAATCGTCAGATCAGACTGTTCCCAAAATTCATAGAGAAAATCCACCGTCTCTCACTGTTACTACCACTTCAGGGTTAGAACATGGAAACTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTTCGATGCGTCAAAGTTAGCGCAATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCAGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCAGAATACAGCCAAAATTTGAGCACAGGCGGTGACGGAGAAGATGGTGGGGAAGGGCTAGATTTGGTGATCGGAGCATCAAACGGTAGTGGGAGAGTTAATAACCAATCCACCCCATTTGTGGAATCTTCATTGTATCCCATCCCAATCAACTCATTCAACAACGTACTGTTTGTGCGGCTGAAGCGGCGCTTAGAAAAAGGAAAAAAACAAAAAGAGAGAGAGAGATTAGTGAAATTTTTGTTGGTGTGGAACTCGAAGTTGCTTTACGCAGTTTAA 990 42.02 MTELFYLDRKQEDDPENQRARSEQQLFLYNSRSNNPQQICSKEFQIWPQYYSHHNQHPPHQNVENYISFGVGPSRRSSLMINAFDHDFVSRSGFTMTKHSGGGSGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQSSDQTVPKIHRENPPSLTVTTTSGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEYSQNLSTGGDGEDGGEGLDLVIGASNGSGRVNNQSTPFVESSLYPIPINSFNNVLFVRLKRRLEKGKKQKERERLVKFLLVWNSKLLYAV* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37243313 37245247 - CsaV3_3G045570.1 Csa03g04251 525156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04251 329 Pfam Domain of unknown function (DUF702) 107 239 - -
Csa03g04251 329 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g04251 329 MobiDBLite consensus disorder prediction 148 185 - -
Csa03g04251 329 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 291 - -
Csa03g04251 329 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g04251 329 MobiDBLite consensus disorder prediction 160 185 - -
Csa03g04251 329 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 191 238 IPR006511 -
Csa03g04251 329 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Csa03g04251 329 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 291 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02103 Csa03g04251 CCT
Csa02g02103 Csa03g04251 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04251 Csa-Chr3:37243313 Csa05g02859 Csa-Chr5:28935755 9.45E-35 dispersed
Csa07g00507 Csa-Chr7:3658819 Csa03g04251 Csa-Chr3:37243313 4.57E-106 transposed
Csa02g02103 Csa-Chr2:19139683 Csa03g04251 Csa-Chr3:37243313 3.02E-54 wgd
Csa03g04251 Csa-Chr3:37243313 Csa04g00536 Csa-Chr4:3546817 5.90E-51 wgd
Csa03g04251 Csa-Chr3:37243313 Csa06g03294 Csa-Chr6:27622500 2.12E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31417 PF05142 DUF702 6.10E-56 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04251 - - csv:101218246 583.563