Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04252 ATGGCATCGTCCGCCTCTGAAATCACCATCCTCCAAATGGAATCGCCTGGAAACGGAAGCACCGGTTACGAAGAAAACAGCGGCGCTTCAAGTCCGGGGGATGGGGATGGGATTTTTTCGGCGGTGGAGACGATGCTTGTGAAATTCCATGCAGGGTATTTCCGAATCGGAATGTCGGTGGGTTGTCAAACGTTGCTATGGAAAATCCTAGCCGTAGAAAATGATGATTTGCTTCATCCCATGGTTCTCATTGTTCTGTGGTCAATGGGTTTCTTTCTTCTTTTTTGTCTCTCTGTTTTTTACCTCTTGAGATGTTTCTTTCACTTCCGGTTGGTCCAATGCGAATTTTTGCATCATGTTGGGGTTAACTACCTTTTTGCCCCTTGGATTTCTTGGTTCCTTTTGCTTCAATCCGCACCCTTTTTGCCCCCTCGAGCCACTCTTTACAAGGTATTGTGGTGGATATTTGCAATCCCAGTAGTGGTGCTGGACGTGAAAATATATGGCCAATGGTTCACAAAAGGAAGGAGATTCCTATGCAGCGTTGCCAATCCCACCAGCCAACTCTCCGTCATCGGAAACTTGGTCGGGGCTCAGGCAGCCGGACGAATGGGGTGGAAGGAGAGTGCATTGTGCTTATTTTCTCTGGGGATCGTTCATTATTTAGTACTGTTTGTGACGCTTTATCAGCGGTTCTCTGGAGTCGACCGGCTTCCTTCCATGCTCCGGCCGGTGTTCTTTCTTTACATAGCAGCTCCAAGCTTCGCGAGCTTGGCTTGGGAATCCATTTCTGGGGCCTTTGATGCACCTTCCAAGATGCTCTTTTTTCTCTCCCTTTTTCTATTCACCGCCCTGGTTTGCAGGCCTTTACTATTCAAGAGGTCAATGAAAAGGTTCACTATAGCATGGTGGGCCTTCTCCTTCCCAATCTCAGCACTTGCTATTGCCTCCATTCAATATCATCACCAAGTTCAAGCTCTCCCAGCCAAAATTCTAATGCTACTTCTTCTTACCATCTCAGTTTTTGTCGTCGTCTCCCTTGTCGCCGCCACTGTACTCAACTCTGGCTTACTCTTGCCCGACGACGACCCACTTTTCAATCCCTCCACTCAACGCAACTCAACTCTGGACGGATCTCATCGTCAAGAACCATTAACTTAA 1161 47.8 MASSASEITILQMESPGNGSTGYEENSGASSPGDGDGIFSAVETMLVKFHAGYFRIGMSVGCQTLLWKILAVENDDLLHPMVLIVLWSMGFFLLFCLSVFYLLRCFFHFRLVQCEFLHHVGVNYLFAPWISWFLLLQSAPFLPPRATLYKVLWWIFAIPVVVLDVKIYGQWFTKGRRFLCSVANPTSQLSVIGNLVGAQAAGRMGWKESALCLFSLGIVHYLVLFVTLYQRFSGVDRLPSMLRPVFFLYIAAPSFASLAWESISGAFDAPSKMLFFLSLFLFTALVCRPLLFKRSMKRFTIAWWAFSFPISALAIASIQYHHQVQALPAKILMLLLLTISVFVVVSLVAATVLNSGLLLPDDDPLFNPSTQRNSTLDGSHRQEPLT* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37253428 37257292 + CsaV3_3G045580.1 Csa03g04252 525157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04252 386 Gene3D - 42 359 IPR038665 -
Csa03g04252 386 Pfam Voltage-dependent anion channel 48 352 IPR004695 GO:0016021|GO:0055085
Csa03g04252 386 MobiDBLite consensus disorder prediction 13 32 - -
Csa03g04252 386 MobiDBLite consensus disorder prediction 13 28 - -
Csa03g04252 386 CDD TDT_SLAC1_like 49 351 - -
Csa03g04252 386 PANTHER OS11G0274300 PROTEIN 41 373 - -
Csa03g04252 386 PANTHER - 41 373 IPR030183 GO:0006873|GO:0008308|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04252 - - - csv:101204639 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04252 Csa-Chr3:37253428 Csa07g00350 Csa-Chr7:2587564 1.04E-121 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1036 . . . . . . . . . Cmo15g00693 Cma01g01940 . Car01g01516 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04252 Chy04g00444 . . . . . . . . . . Cmo01g02002 . . . . . . Cpe02g00097 . . . . . . . Cla05g01901 Cam05g2037 Cec05g2045 Cco05g2101 Clacu05g2029 Cmu05g1909 Cre05g2031 . . . Cme04g00497
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014475 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 0 1 0 21