Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04253 ATGTATGTCTATTTCTCCCACAAACAACAACACCAACAACAACAAGAAAGAAGAAGATCAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAATATGGCTCGTGGGAAGATCCAGATCAAGAGAATAGAAAACCCTACAAACAGGCAAGTGACTTACTCCAAGAGACGCAACGGGCTGTTCAAAAAAGCCAACGAATTGACGGTTCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCCAGCACTGGAAAACTTCACGAGTATATCAGCCCTGCCACTTCGACTAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCACTCACTATGAGAGAATGCAAGACAATCTCAAGAAGCTCAAAGATATCAACCGAAATCTCCGAAGGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTCCGATGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATCTCAAACCAGATCGAAACACACAAGAAGAAGTTAAAGAGCGTAGGAGAAATACACAAGAGTCTTCTACAAGAGTTTGACATTGCAACAGAAGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGTGTAGGAATTGGAGGAGGAGATTATGAGTCAATTATGGGGTTCTCAGGTGCTGCCCATCCTCGCATTTTTGCATTGCGTCTCCAGCCCAACCACACCCACAACAACCATCTTAATAATATTCACCTTCATCACCCTCCTCCTTCAGATCTCACTACCTATCCACTCCTTGAGTAG 831 43.08 MYVYFSHKQQHQQQQERRRSRRRRRRRRKRKNMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGGGDYESIMGFSGAAHPRIFALRLQPNHTHNNHLNNIHLHHPPPSDLTTYPLLE* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37264443 37269044 + CsaV3_3G045590.1 Csa03g04253 525158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04253 276 MobiDBLite consensus disorder prediction 1 35 - -
Csa03g04253 276 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 254 - -
Csa03g04253 276 SUPERFAMILY SRF-like 35 127 IPR036879 GO:0003677|GO:0046983
Csa03g04253 276 PANTHER APETALA3 33 254 - -
Csa03g04253 276 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 MobiDBLite consensus disorder prediction 14 35 - -
Csa03g04253 276 CDD MADS_MEF2_like 34 112 IPR033896 GO:0000977|GO:0045944
Csa03g04253 276 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g04253 276 Pfam K-box region 114 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g04253 276 Coils Coil 116 143 - -
Csa03g04253 276 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Csa03g04253 276 Gene3D - 45 110 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04253 Csa-Chr3:37264443 Csa04g01775 Csa-Chr4:17399610 9.33E-43 dispersed
Csa03g04253 Csa-Chr3:37264443 Csa06g00601 Csa-Chr6:5099335 2.08E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31418 PF01486 K-box 4.20E-22 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04253 K09264 - csv:101218008 443.351