Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04257 ATGTCTACGCTCGATGACGGTTCCAAGGTCGAGGAGGTTAAGGAGAAGGAAGAGAAAGCAGGGGAGCTTTTGTTTTGTGGTGCTACCTCTTGGGATATAATTGGTCGAAAAAAGGGTCCCGTTGAAGGCAACTTGGTCTCTCCTACTCGCCTTCGTCCGCTTGTCGGCATTGACATTCGTTTTGTTGCTTCTGGCTGCACATCGTGTCATTGTGTGGCATTGGACGTGGAAGGTCGTTGCTATACCTGGGGACGCAATGAGAAAGGTCAATTGGGTCATGGAGATTTGATTCAGCGAGATAGGCCTACTATAGTATCTGACCTTTCGAAGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACTGTTGTGGTCACGGAGGATGGAAATTCTCTGTCATTTGGTTGGAACAAACATGGCCAGTTGGGTTCAGGTTCTATAAAAAATGAGATTGAGTCATCTCCTGTCCGTTGTCTTGTGTCTGAAGTGAAAACTACTGCTTGTGGGGGTGAATTCACTGCGTGGTTAACTTCTATTGAAGGAGCTTCCATACTTACTGCGGGTCTTCCTCAATATGGACAGCTTGGTCATGGAACAGATAATGAGTACAACACGAAGGATAGCTCAGTGAGACTTGCTTATGAAGCCCAACCACGCCCTAGAGCAATTGCTTCCCTTGCTGGAGAAAAAATTGTTAAAGTTGCATGTGGAACAAATCATACAGTGGCTGTGGATTCTAATGGTTTTGTCTACACGTGGGGTTTTGGCGGTTATGGAAGACTTGGGCATAAAGAGCAGAAGGATGAATGGGCTCCTCGACGTGTCGATATATTCCAGAGGAGAAATACATTGCCTCCTGATGCTATCATTTCAGCGGGGTCTGTGAACTCTTCTTGTACTGCAGGCGGAGGGCAGTTATATATGTGGGGAAAAATAAAAAATGCAGGAGATGACTGGATGTATCCAAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCAGGCAACATGCACCATTTTGTGGGTGCCGATAACTCGTGCATAAGTTGGGGCCATGCACAATATGGAGAGCTTGGATATGGCCCAATGGGGCAGAAGTCTTCTGCGTTACCCAAAAAGGTTGATATCCTGGAGAACATGCATGTCATAAGTGTTGCATGTGGTGCTGGACACTCTATGGTTGTTGTTGATAGAACAAATGTAGCCGATCGGCTTGATCAGCTCGATATACACGATGGCAAAGCTTTTGATGAAGTGAATGTGGTATTGGAAGCAGTACCACAGAGTAAAGGTTCAGCCATCAAGCCAAGTTCAAAGGCTGCTAAAGCATCACTGAAGGCCAAAAAGAGGAAGAAGTCAAAAGATTCATCAGACTCGGAGGAAGAAGAGGAAGAAAATGAAGATGGTGACAGTAGCGATGAGGAGGCCAATGGGCTATCGGATACGAGCGAACAGTATGGGAGCAAAAGTAAGGGTAGAGGAAAGGGTAGTAAAAAGCCATCCAGTGGTGGGAAAGGCAGTGGTCGTGGACGGGGTCGTCCCCCATCAAACAACAAGAAACCAGCAGCTTCTCAAGGAAAAGCAGGAGCTAAGAGAGGTAGACCTCGGAAGACATGA 1632 46.38 MSTLDDGSKVEEVKEKEEKAGELLFCGATSWDIIGRKKGPVEGNLVSPTRLRPLVGIDIRFVASGCTSCHCVALDVEGRCYTWGRNEKGQLGHGDLIQRDRPTIVSDLSKYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSGSIKNEIESSPVRCLVSEVKTTACGGEFTAWLTSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLAGEKIVKVACGTNHTVAVDSNGFVYTWGFGGYGRLGHKEQKDEWAPRRVDIFQRRNTLPPDAIISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSALPKKVDILENMHVISVACGAGHSMVVVDRTNVADRLDQLDIHDGKAFDEVNVVLEAVPQSKGSAIKPSSKAAKASLKAKKRKKSKDSSDSEEEEEENEDGDSSDEEANGLSDTSEQYGSKSKGRGKGSKKPSSGGKGSGRGRGRPPSNNKKPAASQGKAGAKRGRPRKT* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37313213 37319161 + CsaV3_3G045630.1 Csa03g04257 525162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04257 543 Gene3D - 211 407 IPR009091 -
Csa03g04257 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Csa03g04257 543 Pfam Regulator of chromosome condensation (RCC1) repeat 77 126 IPR000408 -
Csa03g04257 543 Pfam Regulator of chromosome condensation (RCC1) repeat 248 286 IPR000408 -
Csa03g04257 543 Pfam Regulator of chromosome condensation (RCC1) repeat 129 175 IPR000408 -
Csa03g04257 543 Pfam Regulator of chromosome condensation (RCC1) repeat 186 245 IPR000408 -
Csa03g04257 543 Pfam Regulator of chromosome condensation (RCC1) repeat 354 400 IPR000408 -
Csa03g04257 543 PRINTS Chromosome condensation regulator RCC1 signature 79 95 IPR000408 -
Csa03g04257 543 PRINTS Chromosome condensation regulator RCC1 signature 113 126 IPR000408 -
Csa03g04257 543 PRINTS Chromosome condensation regulator RCC1 signature 132 148 IPR000408 -
Csa03g04257 543 PRINTS Chromosome condensation regulator RCC1 signature 235 251 IPR000408 -
Csa03g04257 543 PRINTS Chromosome condensation regulator RCC1 signature 251 265 IPR000408 -
Csa03g04257 543 MobiDBLite consensus disorder prediction 464 482 - -
Csa03g04257 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 403 IPR000408 -
Csa03g04257 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 116 126 IPR000408 -
Csa03g04257 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 304 IPR000408 -
Csa03g04257 543 PANTHER PROTEIN RCC2 11 527 IPR028641 -
Csa03g04257 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 129 IPR000408 -
Csa03g04257 543 PRINTS AT-hook-like domain signature 495 505 IPR017956 GO:0003677
Csa03g04257 543 PRINTS AT-hook-like domain signature 511 522 IPR017956 GO:0003677
Csa03g04257 543 PRINTS AT-hook-like domain signature 532 542 IPR017956 GO:0003677
Csa03g04257 543 MobiDBLite consensus disorder prediction 434 543 - -
Csa03g04257 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 248 IPR000408 -
Csa03g04257 543 SUPERFAMILY RCC1/BLIP-II 20 403 IPR009091 -
Csa03g04257 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 130 180 IPR000408 -
Csa03g04257 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 235 245 IPR000408 -
Csa03g04257 543 Gene3D - 9 210 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04257 - - - csv:101217767 968.378
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04257 Csa-Chr3:37313213 Csa04g02051 Csa-Chr4:20769719 8.32E-11 dispersed
Csa03g04257 Csa-Chr3:37313213 Csa06g01879 Csa-Chr6:16952939 2.60E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32