Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04263 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGTTTGATTAATAACGCCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAATCAGGGGCCCGGAAGGCTATAAACTCCGAGCTGTGGCATGCTTGTGCCGGTCCTCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACACGCTGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTTTTTCTAGTTCCGGACTTTGGATTAAGGCCAAGTAAACACCCAAATGAGTTCTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACACGGTGGATTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCATTGTCAGAGACCTGCACGACAATACCTGGACTTTTCGCCACATATATCGCGGGCAGCCGAAACGACACCTTCTCACAACTGGCTGGAGTCTATTCGTTGGAGCAAAGAGGCTTAGAGCAGGAGATTCTGTTCTTTTTATAAGGGATGAAAAGTCTCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGACAACAAACAACATTGCCATCATCGGTTCTATCTGCCGATAGTATGCATATTGGAGTTCTTGCTGCTGCGGCTCATGCTGCTGCTAATCGAAGTCCATTCACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGTCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGATGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTAGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCTGGTCTTAAACGTCCATTACACGGTGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCAGAAAATATACGTGGCGATCTTTCATATGCCCCAACATTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTAACGGAACCACCTTACAACAAGATTCAACTAACAATTTGGTCAAGATACAGGACATGAAGGACATGCAGAATCCCAAAATGCAGCAGCTTATACCGACAGAAACTGCATCTCCCGGGAATCAAAATCAGCATCATCCAGGACCTGCACAATCTGATCCTATCAACCCAAATTCATCACCAAAAGCAAATGTACCCGGAAAAGTGCAAACATCTGTGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGGAGACAAGGCAAAATATGATCGTGACTTATCAGCCTCAACCAATCAATCCAATCCTTTGCCTCCCGTTGGAGGTTGTGCAGAGGAAAAACTCACTAGTAATGAAATGAATATGCAAACACTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCGATGCAGCCTCAGCTTGAATCACTAATCCAACATCCACAACCAATCGACATGCCTCAGCCTGAGTATACGAATTCAAATGGTTTGATTTCATCCTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGAAATCTTTCCATGTTGGGATTGCAAGACTCCTCAACAGTCTTTCCTGAGGTTCTTAATTTTCCCTTACCTTCAACAGGCCAAGACATGTGGGACCCTCTTAATAATATAAGGTTCTCATCTCAAACCAATCATCTCATCTCATTCTCTCATGCAGACGCATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATATAGTTGTTCTAACCTTGAAATGAGTAATGGTGGAAGTACTTTGGTTGATCATGCAGTTTCAAGTACCATTCTTGACGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGAAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTTTAGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTTCATGATAATTCAGCTGGTACATCCTCATGCAACGTGGACTTCGATGAGGGCAGTCTTCTACAGAATGGTTCATGGAAGCAAGTGGTACCGCCGTTGAGAACTTACACGAAGGTCCAGAAGGCAGGATCCGTTGGGAGATCTATTGATGTCACAAGTTTTAAGAACTATGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTATATGTGGATTATGAGAACGACGTCCTGCTTATCGGTGATGATCCCTGGGAGGAATTTGTTAGCTGTGTACGCTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAATAGTGCTATGATGCAAGGCATCAATTGCCCCATGTCGGAAGGTGGGCGATCTTAA 2847 44.36 MGSVEEKLKTSGGLINNAPQTNLLDEMKLLKEMQDQSGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLNGTTLQQDSTNNLVKIQDMKDMQNPKMQQLIPTETASPGNQNQHHPGPAQSDPINPNSSPKANVPGKVQTSVAIESEAPTAADGDKAKYDRDLSASTNQSNPLPPVGGCAEEKLTSNEMNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPIDMPQPEYTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEVLNFPLPSTGQDMWDPLNNIRFSSQTNHLISFSHADASNLNCMANANIMRDVSDESNNQSGIYSCSNLEMSNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSAGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCPMSEGGRS* 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37338045 37342538 - CsaV3_3G045690.1 Csa03g04263 525168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04263 948 Gene3D - 313 385 - -
Csa03g04263 948 SUPERFAMILY CAD & PB1 domains 836 913 - -
Csa03g04263 948 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 938 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa03g04263 948 SMART B3_2 149 251 IPR003340 GO:0003677
Csa03g04263 948 CDD B3_DNA 148 249 IPR003340 GO:0003677
Csa03g04263 948 Pfam AUX/IAA family 878 921 IPR033389 -
Csa03g04263 948 PANTHER AUXIN RESPONSE FACTOR 5 30 938 - -
Csa03g04263 948 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Csa03g04263 948 Gene3D - 831 923 - -
Csa03g04263 948 ProSiteProfiles PB1 domain profile. 834 918 IPR000270 GO:0005515
Csa03g04263 948 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Csa03g04263 948 MobiDBLite consensus disorder prediction 482 526 - -
Csa03g04263 948 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa03g04263 948 MobiDBLite consensus disorder prediction 482 561 - -
Csa03g04263 948 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Csa03g04263 948 Gene3D - 147 250 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04263 Csa-Chr3:37338045 Csa05g01402 Csa-Chr5:15021321 2.36E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31419 PF02362 B3 1.10E-20 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04263 K14486 - csv:101216825 1927.14