Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04265 ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGTCACATTGTCAGGCTTCGTCAAATGCTCCGCCGGTGGCGCAACAAAGCTAGAATGTCAGCCAATCGCATCCCTTCCGACGTACCCGCCGGACACGTGGCTGTATGCGTCGGAACAAGCTCTCGGCGGTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTGTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTATGGGTTCACCAATCAAGGTCCTTTGGCAATCCCTTGCGACGAGTCAGTTTTCGAAGAAGTTATCCGGTTCATCTCTAGATCCGAGTCTCCTAACTCGGGACGGTTCGTGAAATTGGACGACTTTCAAAGTTATTGTCATATCGGAATCAGAACTGGGCTGGATTTGTGGCCGGAATCTAGGCCTTTGCTTCATGGGTTGGCCGAAAAATCCATTTGCTCCGGAGAATGCTTATGGAGATGGCAAAAACTGGTGGAGGGATCAATTCACCATGTCGTCCCGAGCTCGAATCGGAGTCGGGGCGGAACCGAGAAGGAAGAAGAAAAACAACAGAAAGTGTTGCTAATTCGGCCAGAGGTCTATTTTCTGTAA 603 51.41 MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSICSGECLWRWQKLVEGSIHHVVPSSNRSRGGTEKEEEKQQKVLLIRPEVYFL* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37370908 37371823 + CsaV3_3G045710.1 Csa03g04265 525170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04265 200 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
Csa03g04265 200 PANTHER SMALL AUXIN-UP RNA-RELATED 6 144 - -
Csa03g04265 200 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 144 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04265 Csa-Chr3:37370908 Csa07g00056 Csa-Chr7:620914 2.41E-64 dispersed
Csa02g01321 Csa-Chr2:12856450 Csa03g04265 Csa-Chr3:37370908 4.36E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04265 K14488 - csv:101216342 305.064