Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04274 ATGGCACTCTTAACTAATTCCTTCCAAGATCACAAGAAACCCCTCTCCAATAAACGCCGCAAAAAACATCCAAACCCAACTCCCCCTCCTTCCTCCGCCCAATCCTCATGGGACCATATCAAGAACCTCATCACCTGCAAACAGGTTGAGGTTTCTAGAGTTCAAGAGCCGGGGAAACGGTCGCCAGCCTACTCGAAGTTGGGATCTTCTTGTAGCTCTATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTCCATAGAGCCGATAACTCACCGGAAAGCAGCTCCGTCGGACAGGAAACTAGATTACTTACTAGGAAATCTGCAAACGGTTCTTCTTCTCGTTCTTTAACAGCGCCGACTCCGGCCAGAACTAAAAACGGTGGTTCGGGTTCTGCTTCGTACAATTCGTCGTCTTCTAGAGGAATACAATTACGAAAACTTTCTGGGTGTTATGAATGTCACACCATCGTCGATCCTAGCAGGCTTCCAATTCCAAGGAGTTCTATATGTCCATGTCCTCAGTGTGGAGAGGTTTTCCCCAAGATTGAAAGCTTAGAGCTTCATCAATTAGTTCGCCACGCTGTATCGGAATTGGGTCCTGAGGATTCTGGTCGAAACATCGTGGAGATTATTTTCAAATCAAGCTGGCTAAAAAAGGACCGTCCAATTTGCAAGATCGAACGTATATTAAAGGTCCACAATACCCAACGCACAATCCAACGGTTTGAGGATTGTCGTGACGCAGTGAAGACACGTGCACTTGGTAGCACCAGAAAAAACCCGCGATGTGCGGCCGACGGTAATGAGTTACTGCGCTTCCACTGCAGCGCCTTGTTCTGCGACCTTGGCTCACGTGGCTCAACCGGCTTGTGTGGCTCGATTCCCGCCTGCGGTGTCTGCACTGTCATCCGTCATGGATTCCAGTCTAAACCCGGTGGCCCCCCTGGCGTACGCACCACCGCTAGTAGTGGCAGGGCCCACGATTCCTTCGACTGCGGCGACGGACGACGACGGGCGATGTTGGTGTGCCGTGTCATCGCCGGCAGAGTCAAGCGGATCTCGGACGATGCTGCCGCCACTGGGACGACGACGACAACGGCTACGGAAGAGGAGAATGTGGTGTCGGCAGCGGCGGCGGCTGCCTCATACGACTCTGTTTCACGGCACTCCGGGATGTACTCGAATCTGGAGGAGTTGGTTATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTGATCTACGAAGCGCTCCAAACCTAA 1275 51.37 MALLTNSFQDHKKPLSNKRRKKHPNPTPPPSSAQSSWDHIKNLITCKQVEVSRVQEPGKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKSANGSSSRSLTAPTPARTKNGGSGSASYNSSSSRGIQLRKLSGCYECHTIVDPSRLPIPRSSICPCPQCGEVFPKIESLELHQLVRHAVSELGPEDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALFCDLGSRGSTGLCGSIPACGVCTVIRHGFQSKPGGPPGVRTTASSGRAHDSFDCGDGRRRAMLVCRVIAGRVKRISDDAAATGTTTTTATEEENVVSAAAAAASYDSVSRHSGMYSNLEELVIFNPKAILPCFVVIYEALQT* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37462852 37465719 + CsaV3_3G045800.1 Csa03g04274 525179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04274 424 MobiDBLite consensus disorder prediction 88 141 - -
Csa03g04274 424 ProSitePatterns Zinc finger C2H2 type domain signature. 174 197 IPR013087 -
Csa03g04274 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 423 - -
Csa03g04274 424 MobiDBLite consensus disorder prediction 91 141 - -
Csa03g04274 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 202 IPR013087 -
Csa03g04274 424 MobiDBLite consensus disorder prediction 1 37 - -
Csa03g04274 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 423 - -
Csa03g04274 424 Gene3D - 193 422 - -
Csa03g04274 424 SUPERFAMILY ADP-ribosylation 199 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04274 Csa-Chr3:37462852 Csa05g01505 Csa-Chr5:17444431 1.34E-107 dispersed
Csa03g04274 Csa-Chr3:37462852 Csa03g00581 Csa-Chr3:5040183 4.58E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31420 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04274 - - csv:101222539 801.201