Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04286 ATGGCTGGTGAATATAGGTTCTCAATGGACCAAAAGGACATCGTGAGGATATTGGTGGCCACCATTGATAATTTCACCCGAGGTCGATTGATCAATAAAGAGCAGAGAAACCTTCACAAAGAGCAGTGTGCTGAGAGATTGGCATCTGAAGGTGGAAGTAATGACAAAGATACAGAGGTTAGGTACTCGGATCAAGCAGTGCTGGCTAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTTTAAACACATCCAATATGGAGACTAAGCTTGCACGACTTGACCATGCAGAGAAGATGCTTCAAGTGTGTGCCTTGTTGAATTCTAACGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTGCTGCTTGGGCTCACCTAAATCTTTCATATCTCTGGAAATTGCGAGGAAATGCTCACAACTCAGTCCTCCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCAACGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTTCCACACATGAGCTCAATTGTTGGGTGGTATTCAGAGGAGAGGCATAGACTTATGATCGAAGTGATTCCTGATTCTTCCGATTTATCCTTCACAGCTGATTTAGATCAATTCTTCAATGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGCTGAGAAATTGCAGAAGTTGGAGCAGCTTTATGGAGCATCTTTGGATGAGAATACGAGGCTCTTCGCTAAATACTTCAAAGATTGTATGAATTCTGATTCAAGCTCCACCAAGAAGGTTGCCCCAATGTTGCCAATCGCAGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACATAAAATTTGGACCTATTTTACCCAAGAGTGCCGGGTTTTCATCCATCAAACCAAAATCTAAAGATGGCACGGCAGAAGCAAGTTGGCCAAAGGGGGCTTCCAGTCCAGCCAACAACATAGAGAAATTTGCAGGGCAGTATTCTCAGAGTGATTTGCTAGAGGAGAATGAGGATGATTCTGATCAGGAACCTTACGATTCTTACGATCTCAGTGATACCGCGACTTATAAATTACTATCGCCGAGTAGCACAAGGGCGTCGGAGGATGAGCAAATAGGACCTAAAGAGGAGGTGTCGAAAATGGGGAGTCGCAAACATTCTCCCACCATTTTTTCTCCAATTGCATCTCCTCCAGTTCCTTCACCGAGAGTTCTATATCCAATAGTAAATGAGAAGAAAAGTGAATCGCGTACATTGCGACTTTTATCCAGTCGTGGCGAACAACGAGTTGCTACCTCTGCCCTTGGATCACCAGCTACAAGAAGTGATTACAGCTCCAATTCGGTAGAGTCTGATGGTGAAAAAGATGGCCACAGAAGAATAATATATAAGCCGACGCACAATACAACCTATGACAACGTGAGTAGCCAAGACTTCGAGAATTGTTCAATAGATAAACTTGAGGATGAAAGTAGAAGCCGCTCGTCTGAGAATGTGACACATATGGTGCGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGATCCTGTTACTCTCGAAACTGGGCAGACTTATGAAAGAAAAGCTATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACGCGGCAGCCATTGTCTTCAACTGTAATGCCTAAAACGAATTATGTCTTGAAAAGACTGACAACATCTTGGCAGGAACAGCATCCTGATGTTGCTCAGGATTGTTCGTGGACTGGTACATCGGTAAGTACTGTCGGTTCTACCTTCAAAAGGAGGAGCTCTGTGGCAACTACTCCTTGCCAACCATTTCATGGTCCTCTTAACAGGACTTACGAGTCTCTTAATCAAAAAGGCAAAAGATTAATGCAAGAAGCAGTGTCTTTATCACCCACCAGTGTAATATCTCAAGCCACAGTCGAGAAAATCATCAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAGAACTTGAAACAATGCGAGACTGCTGTGCTCACTATGGCAGGGTTCTGGAAGGACTCAAAAGGTGATCCAGCGGTTCATTCCTACTTATCCGAATTGGCTGTAGTGAACGGCTTTATGGAAATACTGTTAAATTCCCGGGAAAGAGAAGTCCTCAGAACCTCGATTTACGTTCTTTCTGAGCTTATTTGTGCAGATGGAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCAGATTTTGATTGCCTAGCTTCTTTGCTGACGAGTGGGTTGTCAGAGGCTTCCGTTCTTATGTGCTTGCTAAGGCCCACATTTACTAAGTTGTCAGCTCATGAACTTATACCTTCCCTAGCCCAGCTGCTCCAGAAGAAAAATGAAGATTTCGATGATCTGCCATTTGTAATAGAGCCAAAAGATGCTGCTATCGCAATGCTTGAACAAATTTTGATGGGAGGGGATGAATATAGCCAATCCCGGAATGTTGCGAGTCTTATCTCTGCAGAAGGATGCCCTGCATTAGTCAAGTTTTTGGATGGGGAAGAAGTGAGGAGGCCAATACTTTCTATGCTTTTATGTTGTATGCGAGTCGACAAAGGTTGCAAGGACTCAATCGTAGAGAAGATCGAGCTTGCTCCGGTTCTTGAGTTACTTTATACTGGAAATGAGGACGACAGAGGCCTTTGTGTGGCTTTTCTGTCAGAGCTAGTTCAAATGAACAGAAGGACACAATGCAATCAAATTTTGCAGCAAATTAAAAATGAAGGAGCATTCAGTACGATGCATACACTTCTTACACATCTTCCAAAGGCTACAATTGAGCAACAACCTAGCATCGCCTCCCTTCTTCTCCAGCTGGATCTCCTGGTTGAACCACGAAAAATGAGCATTTACCGAGAAGAATCTATAGATGCACTGTTTGAAGCTTTTCGTAGGAAGGACAACTATAACGTTCAAACTGCAGCTGCAGATGCTTTGTTATATCTATCTGGGCGATTGACTTCCTCAGGAAAGTGCTATGCAAAATCGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTGATGAAGGACGAGGGACTGAGGAAGCCTGACAGCGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAATCAGTGTATGGGAAAAAAGAGTAGCACTGGTTATTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTATGAAAGAATGCCTGAAGAGTAAATCCTTAGAGATGGAAAAGTCCTGTCTTGTCATCGTTTCCTGGCTGTGCCACATGGTTTCAACGCTCCCAGATACTGGGGTACGAGAGACTGCTCGCAGGTTCTTGCTTGATGAACTTGTAAACGTTCTACAATCTTCTAATAGCCAGGAGGATAAGATTTTAGCATGTCTTGCTTTAAAAACTTTCATTAGCGACCCAGCTGCACTTGAGGAACTAGGGCTTCATGCAAGATCCATCAACAAAACGTTAAGAAAGCTTAGGAGAAGCTCATCGGTGGTCAATGCTATAATGAAAGCCTTGATGAACTTGCCATCTGTTGACACAACGGAGCTCTGGAGTTACACTGAAGTTGGTGCAATAGATTGCAGCTCAAATGGAGAGGTTTTGTCTCTGCTTCATTTGGAAGGGCGGGTTTTAAGTAGTCACTCGGATGGCACCATCAAGGTTTGGGATGCTAGAAATAAAGTATTAAGGTTGATCCAAGAAGCTCGCAAGCACTCAAAAGCTGTAACATGCCTTTGTGTTTCCTCTTCGTACGACACAGTATACAGCGGTTCCTTAGACAAAACAATTCGGGTATGGAGCATCAAATCTGAAGAAATACAGTGCGTTCAAGTCCACGAAGTGAAGGAGCCAGTTTATGACTTGAAAGTAAATGGCAAACTCGCATGCTTTGTTTCTCCAGGAAATGGTGTTAAGGTGTTCAACTTCTTTGGGGTTCCCAAGCATATAAATTTCAACAAATACGTCAAATGCCTGGCACTATCAGAAGATAAACTCTACTGCGGTTGTTCTGGTGACAGCATAATGGAGGTGGATTTGTCCAAAAATGCCACAAGCACGTTCTACACGGGTGTAAGAAAATTGCTTTGGAAACAAAACATCTACTCCTTACACATCCACGGTGACCTACTGTCTGCTGCCGGTTCGACCGTGGATGGAACGGCAGGGAAGACGTTTTCGCTGGCAAACAAGACAACAGTAGGATCCTTTTCAACTGGAGTTGACATACATCACATGGCCGCAAGCACCGATTTCTTGTTTACAGCCTCCAGATTGGGGATGTTAATAGAGATTTGGGCGAAAGAGAAACACACAAAAATTGGTTCAGTTAAAATAGGTAGCAGTGCTAGTGGTAGCCACACAAAAATCACTTCCCTAACTACAGACGATGGAGGATTGCTACTCGTTGGTACCTCAGATGGAAAGATACAGGTTTGGGCTCTTGAATGA 4470 43.38 MAGEYRFSMDQKDIVRILVATIDNFTRGRLINKEQRNLHKEQCAERLASEGGSNDKDTEVRYSDQAVLANLDWGIEALEEALNTSNMETKLARLDHAEKMLQVCALLNSNEKTAGVPNFYLAAWAHLNLSYLWKLRGNAHNSVLHILEMFIVDPFFSRNDFAPELWKELFLPHMSSIVGWYSEERHRLMIEVIPDSSDLSFTADLDQFFNESLIFSLRPDQAEKLQKLEQLYGASLDENTRLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSIKPKSKDGTAEASWPKGASSPANNIEKFAGQYSQSDLLEENEDDSDQEPYDSYDLSDTATYKLLSPSSTRASEDEQIGPKEEVSKMGSRKHSPTIFSPIASPPVPSPRVLYPIVNEKKSESRTLRLLSSRGEQRVATSALGSPATRSDYSSNSVESDGEKDGHRRIIYKPTHNTTYDNVSSQDFENCSIDKLEDESRSRSSENVTHMVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKTNYVLKRLTTSWQEQHPDVAQDCSWTGTSVSTVGSTFKRRSSVATTPCQPFHGPLNRTYESLNQKGKRLMQEAVSLSPTSVISQATVEKIINSLKPFVSCLCNFENLKQCETAVLTMAGFWKDSKGDPAVHSYLSELAVVNGFMEILLNSREREVLRTSIYVLSELICADGSVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTKLSAHELIPSLAQLLQKKNEDFDDLPFVIEPKDAAIAMLEQILMGGDEYSQSRNVASLISAEGCPALVKFLDGEEVRRPILSMLLCCMRVDKGCKDSIVEKIELAPVLELLYTGNEDDRGLCVAFLSELVQMNRRTQCNQILQQIKNEGAFSTMHTLLTHLPKATIEQQPSIASLLLQLDLLVEPRKMSIYREESIDALFEAFRRKDNYNVQTAAADALLYLSGRLTSSGKCYAKSWLLKLAGFDQPYNALMKDEGLRKPDSELSEREEEEKAISVWEKRVALVICNHEKGYIFKVMKECLKSKSLEMEKSCLVIVSWLCHMVSTLPDTGVRETARRFLLDELVNVLQSSNSQEDKILACLALKTFISDPAALEELGLHARSINKTLRKLRRSSSVVNAIMKALMNLPSVDTTELWSYTEVGAIDCSSNGEVLSLLHLEGRVLSSHSDGTIKVWDARNKVLRLIQEARKHSKAVTCLCVSSSYDTVYSGSLDKTIRVWSIKSEEIQCVQVHEVKEPVYDLKVNGKLACFVSPGNGVKVFNFFGVPKHINFNKYVKCLALSEDKLYCGCSGDSIMEVDLSKNATSTFYTGVRKLLWKQNIYSLHIHGDLLSAAGSTVDGTAGKTFSLANKTTVGSFSTGVDIHHMAASTDFLFTASRLGMLIEIWAKEKHTKIGSVKIGSSASGSHTKITSLTTDDGGLLLVGTSDGKIQVWALE* 1490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37521661 37528639 - CsaV3_3G045920.1 Csa03g04286 525191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04286 1489 Gene3D - 1185 1321 IPR015943 GO:0005515
Csa03g04286 1489 Gene3D - 1322 1489 IPR015943 GO:0005515
Csa03g04286 1489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1242 1279 - -
Csa03g04286 1489 SMART Ubox_2 513 577 IPR003613 GO:0004842|GO:0016567
Csa03g04286 1489 MobiDBLite consensus disorder prediction 422 463 - -
Csa03g04286 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1242 1283 IPR001680 GO:0005515
Csa03g04286 1489 SUPERFAMILY WD40 repeat-like 1200 1487 IPR036322 GO:0005515
Csa03g04286 1489 SUPERFAMILY RING/U-box 505 583 - -
Csa03g04286 1489 MobiDBLite consensus disorder prediction 339 406 - -
Csa03g04286 1489 Pfam WD domain, G-beta repeat 1244 1274 IPR001680 GO:0005515
Csa03g04286 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1470 1489 IPR001680 GO:0005515
Csa03g04286 1489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 585 IPR013083 -
Csa03g04286 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
Csa03g04286 1489 MobiDBLite consensus disorder prediction 374 388 - -
Csa03g04286 1489 ProSiteProfiles U-box domain profile. 509 584 IPR003613 GO:0004842|GO:0016567
Csa03g04286 1489 SUPERFAMILY ARM repeat 712 1166 IPR016024 -
Csa03g04286 1489 CDD RING-Ubox_PUB 514 556 IPR045210 -
Csa03g04286 1489 Gene3D - 644 1030 IPR011989 -
Csa03g04286 1489 MobiDBLite consensus disorder prediction 428 452 - -
Csa03g04286 1489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1489 - -
Csa03g04286 1489 SMART WD40_4 1192 1230 IPR001680 GO:0005515
Csa03g04286 1489 SMART WD40_4 1235 1274 IPR001680 GO:0005515
Csa03g04286 1489 SMART WD40_4 1279 1315 IPR001680 GO:0005515
Csa03g04286 1489 SMART WD40_4 1449 1487 IPR001680 GO:0005515
Csa03g04286 1489 MobiDBLite consensus disorder prediction 299 324 - -
Csa03g04286 1489 Pfam U-box domain 511 581 IPR003613 GO:0004842|GO:0016567
Csa03g04286 1489 MobiDBLite consensus disorder prediction 352 373 - -
Csa03g04286 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04286 - - - csv:101221826 2868.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03462 Csa-Chr1:31605249 Csa03g04286 Csa-Chr3:37521661 0 dispersed
Csa01g03549 Csa-Chr1:32631037 Csa03g04286 Csa-Chr3:37521661 3.33E-13 dispersed
Csa03g01478 Csa-Chr3:10966122 Csa03g04286 Csa-Chr3:37521661 2.99E-20 dispersed
Csa03g04286 Csa-Chr3:37521661 Csa05g02038 Csa-Chr5:23691822 7.30E-18 dispersed
Csa03g04286 Csa-Chr3:37521661 Csa01g02400 Csa-Chr1:21307088 1.01E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39