Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04288 ATGTCTACACAAATTTCATTTCTATTATATCTTCTACCAATCCTAACTTCACTCTCAGGAGTATTCTCCACCACTTTCAGCATAGTAAACCAATGTGATTACACAGTTTGGCCTGGAATCCTCTCCAACGCCGGAGTTTCACCACTTCCCATCACCGGCTTCGTCCTCGCTGCCGGTGAGTCCAAAACCATCTCCGCTCCAGCCTCTTGGGGAGGCCGATTCTGGGGCCGAACCCACTGTTCACAAGACGCCACCGGTAAATTCTCTTGCCTTACCGGAGATTGCGGCTCTGACAAAGTCGAATGTATCGGAAACGGGGCGAAACCACCGGCAACTCTGGCTGAGTTCACTCTCGACGGCGCCGGAGGACTTGATTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGTTGGTTGTCCCACAAGGCGGCACCGGCGAGAAATGCATGAGCACGGGATGCGTTGTGGATTTAAACGATGCTTGTCCTCAGGAGCTGAAGGTTACGAGCGATGAGGGCGGTGATAACGTCGCATGTAAAAGCGCGTGTGAAGCATTTAACCAACCGCAATATTGTTGTAGTGGCGAGTTCGGGAGTCCAGATACTTGCAAACCTTCCGCGTACTCGCAGGTCTTCAAAAGCGCTTGCCCACGAGCATACAGCTACGCCTACGATGACAAAACAAGCACGTTTACATGTGCCGACGCTGATTATATTATTACTTTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACACCGGCGATCAACGGCGGCAACGGTACAATGGTATACGAAGGGGCTGCGTATGATTTTAGCGGCGCGTCGAGAACCACGCTCCGTCGTATTCTAGGGGTAGTCGTTGCGACGGTGGGAATTCTTCAAATTCGGCAACTCTTTTGA 930 50.86 MSTQISFLLYLLPILTSLSGVFSTTFSIVNQCDYTVWPGILSNAGVSPLPITGFVLAAGESKTISAPASWGGRFWGRTHCSQDATGKFSCLTGDCGSDKVECIGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCMSTGCVVDLNDACPQELKVTSDEGGDNVACKSACEAFNQPQYCCSGEFGSPDTCKPSAYSQVFKSACPRAYSYAYDDKTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAAYDFSGASRTTLRRILGVVVATVGILQIRQLF* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37543700 37550504 + CsaV3_3G045940.1 Csa03g04288 525193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04288 309 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Csa03g04288 309 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Csa03g04288 309 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Csa03g04288 309 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Csa03g04288 309 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Csa03g04288 309 Gene3D Thaumatin 24 246 IPR037176 -
Csa03g04288 309 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Csa03g04288 309 CDD TLP-PA 25 245 - -
Csa03g04288 309 PANTHER OS03G0233200 PROTEIN 8 270 IPR001938 -
Csa03g04288 309 Pfam Thaumatin family 30 246 IPR001938 -
Csa03g04288 309 PANTHER BNAA02G17480D PROTEIN 8 270 - -
Csa03g04288 309 PIRSF PR5 1 280 IPR001938 -
Csa03g04288 309 SMART tha2 26 246 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02142 Csa03g04288 CCT
Csa02g02142 Csa03g04288 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01372 Csa-Chr2:13179658 Csa03g04288 Csa-Chr3:37543700 1.09E-121 dispersed
Csa03g04288 Csa-Chr3:37543700 Csa06g03334 Csa-Chr6:27860378 1.00E-99 dispersed
Csa05g03131 Csa-Chr5:31221722 Csa03g04288 Csa-Chr3:37543700 5.14E-84 dispersed
Csa03g00099 Csa-Chr3:781308 Csa03g04288 Csa-Chr3:37543700 5.25E-95 transposed
Csa03g01890 Csa-Chr3:14568173 Csa03g04288 Csa-Chr3:37543700 5.30E-67 transposed
Csa05g02410 Csa-Chr5:26166270 Csa03g04288 Csa-Chr3:37543700 1.89E-90 transposed
Csa02g02140 Csa-Chr2:19375453 Csa03g04288 Csa-Chr3:37543700 2.66E-141 wgd
Csa03g04288 Csa-Chr3:37543700 Csa06g03333 Csa-Chr6:27851431 3.91E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04288 - - csv:101214136 639.802